Query= MSMg01no531_b23.b1 MSMg01no531_b23.b1 CHROMAT_FILE:
MSMg01no531_b23.b1 PHD_FILE: MSMg01no531_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:40 2005
(353 letters)
>mm_chr17_39290469_39291221
Length = 753
Score = 609 bits (315), Expect = e-179
Identities = 344/363 (94%), Gaps = 18/363 (4%)
Strand = Plus / Minus
Query: 5 gaattctctagtccctacagttatactgcaacagcattttctaaagtcttcagttcatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaattctctagtccctacagttatactgcaacagcattttctaaagtcttcagttcatgt 365
Query: 65 gttgtctacatgagaagtaggtgggctgtcctgtcaattaattgtcctcttctcttggtc 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 364 gttgtctacatgagaagtaggtgggctgccctgtcaattaattgtcctcttctcttggtc 305
Query: 125 aactcttaatagatatcaagattagtcaccactgttctccccaaacagagatcactgact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aactcttaatagatatcaagattagtcaccactgttctccccaaacagagatcactgact 245
Query: 185 tgttctctctttgagtctcaggcattacttgctttgtttt------------atagatag 232
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 tgttctctctttgagtctcaggcattacttgctttgttttatagatagaaagatagatag 185
Query: 233 atagaaagatagata---a-atagatagatagatagatagatagatagatagatagatag 288
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atagaaagatagatagatagatagatagatagatagatagatagatagatagatagatag 125
Query: 289 ata--gatatggatagatatagatattatatatttatgtattatatatagacattatata 346
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atatggatatggatagatatagatattatatatttatgtattatatatagacattatata 65
Query: 347 ttt 349
|||
Sbjct: 64 ttt 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_b23.g1 MSMg01no531_b23.g1 CHROMAT_FILE:
MSMg01no531_b23.g1 PHD_FILE: MSMg01no531_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:40 2005
(589 letters)
>mm_chr17_39130735_39131723
Length = 989
Score = 1069 bits (553), Expect = 0.0
Identities = 580/589 (98%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 1 agaacaggatctcaaacagggctagttcttggagagaagtgataataaagaaacatggag 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 agaacaggatctcaaacagggctagttcttggagagaggtgataataaagaaacatggag 261
Query: 61 ggataatattactggtgtgcttctactggcttgtgcaatatgatttcatatacacccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggataatattactggtgtgcttctactggcttgtgcaatatgatttcatatacacccatg 321
Query: 121 acaaactaccttgaaactgaacaatccataatagactgtcactttgccattaatgagtaa 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 acaaactaccttgaaactgaacaatccataatagtctgtcactttgccattaatgagtaa 381
Query: 181 ttaagaaaattattaatagatggatacattagaagcatttttttcaagtgaggttctgtc 240
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 382 ttaagaaaattattaatagatggataccttagaagcatttttt-caagtgaggttctgtc 440
Query: 241 tcagaaatgattagtttatgtgtcatgttgcttagccagtaaaacttactacttctttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaaatgattagtttatgtgtcatgttgcttagccagtaaaacttactacttctttac 500
Query: 301 ttgacacacacattgatattaagccacacttcttattaaccccccaaaaatctcaggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgacacacacattgatattaagccacacttcttattaaccccccaaaaatctcaggctg 560
Query: 361 aatatataaataacattaaaattctcattttttctagttgaaacacataaaaaatttgct 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 aatttataaataacattaaaattctcattttttctagttgaaacacataaaaattttgct 620
Query: 421 cctttactgtgaaaatgaccaatcaatttccatcccaacttgaaactcattcaataagca 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctttactgagaaaatgaccaatcaatttccatcccaacttgaaactcattcaataagca 680
Query: 481 aattaactcatgacactactagtgatattctaacttgctagcagacaagattctaacatt 540
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 681 aattaactcatgacactactagtgtttttctaacttgctagcagacaagattctaacatt 740
Query: 541 gctgccctctgaaggagtccatctagcagctaactcatagggatgcaga 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgccctctgaaggagtccatctagcagctaactcatagggatgcaga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
