Query= MSMg01no532_g01.b1 MSMg01no532_g01.b1 CHROMAT_FILE:
MSMg01no532_g01.b1 PHD_FILE: MSMg01no532_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:17 2005
(561 letters)
>mm_chr17_8255497_8256457
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 559/561 (99%)
Strand = Plus / Plus
Query: 1 gaaaaatggtatgtgaactcatttctacacagtgtagcaaccaaacaagaagccggaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaatggtatgtgaactcatttctacacagtgtagcaaccaaacaagaagccggaagg 260
Query: 61 tggatgggaggtgctgagtctgctggtggcaagagcgggaagtcagggtaggagatccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatgggaggtgctgagtctgctggtggcaagagcgggaagtcagggtaggagatccag 320
Query: 121 agtcccagtgctgaaaggtctgtcataggtgacaaaagccacatgaacttactaagcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcccagtgctgaaaggtctgtcataggtgacaaaagccacatgaacttactaagcgac 380
Query: 181 accaaactctgtacctcaaaatggttcacgccgtatatctgtgtttattgtacagtggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaaactctgtacctcaaaatggttcacgccgtatatctgtgtttattgtacagtggta 440
Query: 241 aacattgtaagtagaggctagagcattggttcagcagttaagagcactgtctgtcttcta 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacattggaagtagaggctagagcattggttcagcagttaagagcactgtctgtcttcta 500
Query: 301 gaggacacagattagattcccagaacctaaatggtagctcacaaccatttgtaactccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggacacagattagattcccagaacctaaatggtagctcacaaccatttgtaactccag 560
Query: 361 tcctaggggatccagtgccctcttctggccttcttgggcaatgtgcacaacacccagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctaggggatccagtgccctcttctggccttcttgggcaatgtgcacaacacccagcac 620
Query: 421 atacatacatgcaagcagaacaccacatacatcatttttttaaatggggaaatacactgc 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 atacatacatgcaagcagaacaccacatacatcattttttttaatggggaaatacactgc 680
Query: 481 atccagagccttctctacagtattgagagttggcaggaatagatccaggattaacaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccagagccttctctacagtattgagagttggcaggaatagatccaggattaacaaaat 740
Query: 541 agaggttgtgaaggctgagct 561
|||||||||||||||||||||
Sbjct: 741 agaggttgtgaaggctgagct 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_g01.g1 MSMg01no532_g01.g1 CHROMAT_FILE:
MSMg01no532_g01.g1 PHD_FILE: MSMg01no532_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:17 2005
(588 letters)
>mm_chr17_8435021_8436002
Length = 982
Score = 990 bits (512), Expect = 0.0
Identities = 536/548 (97%), Gaps = 10/548 (1%)
Strand = Plus / Minus
Query: 45 gatatgtatgcctggtctgtctccc----cccccacccccaagtcctccagactcttttc 100
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 982 gatatgtatgcctggtctgtctcccccctcccccacccccaagtcctccagactcttttc 923
Query: 101 acgacctcatttgtcatgaagacgagacaggatctcactatgtagccccgactgtcttgg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 acgacctcatttgtcatgaagacgagacaggatctcactatgtagccccgactgtcttgg 863
Query: 161 aattccttgtggagagcagagatctgcctgcctctgcctcctgagtgctaggatcaaagg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 aattccttgtggagagcagagatctgcctgcctctgcctcctgagtgctaggatcaaagg 803
Query: 221 tgtgaaccctacacctggttgaactttttttaaaactgcacccagctagaaagtaaatct 280
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 802 tgtgaaccctacacctggttgaacttttttaaaaactgcacccagctagaaagtaaatct 743
Query: 281 cttctagaaaccacctcccccccaaaaaaaagacttacctgaaagaaataaaatccaata 340
||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 742 cttctag-aacc----ccccccc-aaaaaaagacatacctgaaagaaataaaatccaata 689
Query: 341 aaacagatttaactttgttaaggaccaaacagaaatcctgcattttgggctaaagtaatg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaacagatttaactttgttaaggaccaaacagaaatcctgcattttgggctaaagtaatg 629
Query: 401 tgggacaactactatgaagccacatctttctctgaaaacggggacttttctgacctccct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgggacaactactatgaagccacatctttctctgaaaacggggacttttctgacctccct 569
Query: 461 tctccacccaagagggtaaagtgaaccacagaacactgctccccacccccacagctccta 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctccacccaagagggtaaagtgaaccacagaacactgctccccacccccacagctccta 509
Query: 521 cttcccccacctttacccagctttccagggctctcagtccacaccagatggcttccgttc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttcccccacctttacccagctttccagggctctcagtccacaccagatggcttccgttc 449
Query: 581 aaatggcc 588
||||||||
Sbjct: 448 aaatggcc 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 982
Length adjustment: 10
Effective length of query: 578
Effective length of database: 972
Effective search space: 561816
Effective search space used: 561816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
