BAC Information

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BAC

Clone NameMSMg01-532M10
Chromosome17 (Build37)
Map Location 25,617,177 - 25,617,779
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4
Downstream geneSstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532M10.T7 (MSMg01no532_m10.b1)MSMg01-532M10.TJ (MSMg01no532_m10.g1)
ACCAG600854AG600855
length897758
length of high quality
(start - end)
209 (49 - 257)603 (81 - 683)
definitionCHROMAT_FILE: MSMg01no532_m10.b1 PHD_FILE: MSMg01no532_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:47 2005CHROMAT_FILE: MSMg01no532_m10.g1 PHD_FILE: MSMg01no532_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGTATCCCATTTTTTAATAGGGTTATTTGG
TTTTCAGGAGTCCAACAACAACAACTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTCCTCCTCCTCC
TCCTCCTCCTCCACCACCACCTCCACCTCCTCCACCTTCTCCTTCTGTTT
CATGTACAGAGATTTCTAACATTTTTTTTTTTATAGATTTCTATAAACAT
AGCATATTTTAATGTGAATATGTAATTGTATTTTTATTTTGTATACAAAT
AATGTAAATATGATTTATTTTTTTAATTTAACTGTTACTTTATTTTTTTC
TTAGTTAAATGTAGAATATATTTGTTTAATAATGGTTAAGTAAAAGTGAA
ATCATTGGAGATTATATTTCTATGAGGCCTTTATTTAATACATAAAATAA
ATAAATAGAAAATTTTATATGTTTTAGTATTGAATCTGAGTGTGTAGATT
TTTAGGGGATGTGTATGAATAAGAATGTGTTGTGATATATATTGTAGGAT
GTTTGTTTGTATAATTAGAGTTTTAATGGGTATATGATATGTGTAATATT
GATTTAGGATTGTATTGTGTTTCTGTATTACGTATATATATGTAATATGA
TTTATTAGAGGATTATAAAAATATATATATATAATATAAGTTATATAAAT
TAATTATAAATCTATAATATTAATTAATTGTATTAAATTTTTAATTTCTT
TTTTATTATTATCTAATAATTTATAATTATTTTAAATGTTTATTTTT
GAAGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGAAAGAAGTAAGTAG
CTAGTGCCAGGGCTGGAGCCTTCTCTGTGGTCTTCTAGGAAAGATGGCAA
CCTAGGTCTGAGCATTGGTCTCTGGAACAAATGGGCTTTCACAGCAACTC
AGCAGGACCAGGTGCAACCCCTATAGCAGAAAAGACAGTGACATCAGTGA
GGGATAGTACTGGCCCCAGTCACCTCTAGCCCCCAGAGTCCCTCTCTCTG
TGACACCCTCACTGGTCCCTAAGAAGATATGCCCTCTGATGGGGTAACCT
GGGACTCTCCCAGTTGGTAAAGTATGTAGGAGAAGAGCCTTTCCAGGAGT
TGAAGGCTAGGGAGCAGTATGGGGTTTTCAAGTCTCTATCTGCTGGGGCG
TGGGGGGCAGGGCTGTCTCTCTGGTCAGGGGACAGACGTATGTGTCTATG
GATGCTGAGCAGAGGGGTCAGCATTCAGGGTGACTCAGTGAACAGGACAT
CGAGTCTCAGGCCAGAAATAGCTCTGGCTGAGAGCAGCCACCAGCATCAC
CGTGACGACAGGGTGTCATGGCCCCCAGCGGTAGATGTCCTGCTGTGCCA
GGGAAAAACTATGCACACGCTTTGCCGTCCCTTGCCCAGAAGCCTGCAAA
GGTTTGCTCTCTATGGTACAGCACTGGGAGCCTGGAAACTTGTGCCAGAG
AGGGCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_m10.g1 MSMg01no532_m10.g1 CHROMAT_FILE:
MSMg01no532_m10.g1 PHD_FILE: MSMg01no532_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:47 2005
         (603 letters)



>mm_chr17_25616977_25617979
          Length = 1003

 Score = 1166 bits (603), Expect = 0.0
 Identities = 603/603 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgaaagaagtaagtagctagtgccagggctggagccttctctgtggtcttctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tccctgaaagaagtaagtagctagtgccagggctggagccttctctgtggtcttctagga 744

                                                                       
Query: 61  aagatggcaacctaggtctgagcattggtctctggaacaaatgggctttcacagcaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aagatggcaacctaggtctgagcattggtctctggaacaaatgggctttcacagcaactc 684

                                                                       
Query: 121 agcaggaccaggtgcaacccctatagcagaaaagacagtgacatcagtgagggatagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agcaggaccaggtgcaacccctatagcagaaaagacagtgacatcagtgagggatagtac 624

                                                                       
Query: 181 tggccccagtcacctctagcccccagagtccctctctctgtgacaccctcactggtccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggccccagtcacctctagcccccagagtccctctctctgtgacaccctcactggtccct 564

                                                                       
Query: 241 aagaagatatgccctctgatggggtaacctgggactctcccagttggtaaagtatgtagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagaagatatgccctctgatggggtaacctgggactctcccagttggtaaagtatgtagg 504

                                                                       
Query: 301 agaagagcctttccaggagttgaaggctagggagcagtatggggttttcaagtctctatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaagagcctttccaggagttgaaggctagggagcagtatggggttttcaagtctctatc 444

                                                                       
Query: 361 tgctggggcgtggggggcagggctgtctctctggtcaggggacagacgtatgtgtctatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgctggggcgtggggggcagggctgtctctctggtcaggggacagacgtatgtgtctatg 384

                                                                       
Query: 421 gatgctgagcagaggggtcagcattcagggtgactcagtgaacaggacatcgagtctcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatgctgagcagaggggtcagcattcagggtgactcagtgaacaggacatcgagtctcag 324

                                                                       
Query: 481 gccagaaatagctctggctgagagcagccaccagcatcaccgtgacgacagggtgtcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccagaaatagctctggctgagagcagccaccagcatcaccgtgacgacagggtgtcatg 264

                                                                       
Query: 541 gcccccagcggtagatgtcctgctgtgccagggaaaaactatgcacacgctttgccgtcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcccccagcggtagatgtcctgctgtgccagggaaaaactatgcacacgctttgccgtcc 204

              
Query: 601 ctt 603
           |||
Sbjct: 203 ctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)