BAC Information

Click to search

BAC

Clone NameMSMg01-532M17
Chromosome17 (Build37)
Map Location 41,740,250 - 41,740,623
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532M17.T7 (MSMg01no532_m17.b1)MSMg01-532M17.TJ (MSMg01no532_m17.g1)
ACCAG600868AG600869
length755768
length of high quality
(start - end)
536 (87 - 622)101 (222 - 322)
definitionCHROMAT_FILE: MSMg01no532_m17.b1 PHD_FILE: MSMg01no532_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:49 2005CHROMAT_FILE: MSMg01no532_m17.g1 PHD_FILE: MSMg01no532_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NATTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATATAAT
GCGCGGAATTCTACAAAATTTTCTAAATAAAATCAAAGTAAATGATTTAA
TTCATTTTATTTATCTCTTATTTTATTGGATATGGCAATGAAATTTAAAC
TCCAGTTAATAAATCTGTTTGTCTTTGGTCCTATCTGAGGGCAGCATCTA
ATACAGTGACCTTAAACCTTCTGAATGAGTGTGACATTCTATTAGAATTG
AAAAAAAATTAAATGCAAGTCTCTGAGGCAGTGTTCATAATGTTCTTACC
CTCCCTAAGAAGAAGTGCTTTCAAAAGCTTCTTCAAAGTAATTATGTGAA
TTAATATATCCCTGACTAAGAAAATATTAAGTATCCACTCCGGCTGACAT
TTTAGATATATGTATTTCTTCTTAGATGCATATTTCAGAAAATTTGCAAT
TGTAAATTCTTTCTTTCTTTTTCATATAGAAACTCGCAGTCTTCCACTAA
CATCTAAAACACAATTTCTTTTTTCCTAGGTCCTTAGAAGTAAACATGTA
TTTTAAAATGCAATCTTGCCCTGGAGCTAACCTTGTGGCACAGATCTCCA
TGCCCAAATCCCTCCCAGAAAGAGCTGGTCCCCCATGAGTGCTGTCACTC
CTAACTACACAGGTTGTGACCACCATGTTTGCTCCAATAACTGGGCAGAT
AGGGTCACGGGAAAACACAGGGCACAGGATCTGCATAACTGCCTGTGATA
GGATC
NGGGTCATTATAAGGTGTAGCCGGGCGGCCGCCTGGTTTCTAAAAAGGAG
GGGACACATAGAAGGTTCCCCGAAAATCGCACCTGAGGAATACTGAATGG
GTGAGAAGCACCTGAAGAAATGTTCAGCATCCTGAATCGTCGGAGAACTG
CAGATCAAAACAATCCTGAGATTCCACCTCATACCAGTCGGAATGGCTAA
GATCGGGAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAG
GAACACTTCTTGATTGTTGGTGGGATTGCAAGCTTTTACAACCACTCTGG
AAATCAGTATGGCTGTTCCTCAGAATATTGGACATAGTACTACCGGAGGA
TTCAGCAATACCTTTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTA
AGAAGGACACACACTCCACAATGTTCATATCAGCCTTATTTATAATAGCC
AGAAGCTGAAAAGAACCCAGATGTGTGGTACATTTACACTATGGAGTACT
ACTCAGCTATTAAAAACAATGAATTTATGTAATTCCTAGGCAAATGGATG
TACTGGATGGCATCTTCCTGAGTGAGGTAACCCAATCACTAATTAACTCA
CATGATATGTACCTCCCTGATAAATGGACATTAGCCCTTAATCTTTTAAT
ATCCCAGATATATGCTATCATTTGCGAAGGCCATGATACTTATGAGGAAC
GAAGGACCAGGGGGGTGTAAGCTTTGTAACCTTATAATTTGGGGAAAGGA
CCTGCCCTTGTATGGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_m17.b1 MSMg01no532_m17.b1 CHROMAT_FILE:
MSMg01no532_m17.b1 PHD_FILE: MSMg01no532_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:49 2005
         (536 letters)



>mm_chr17_41740063_41740998
          Length = 936

 Score =  638 bits (330), Expect = 0.0
 Identities = 358/374 (95%), Gaps = 13/374 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaatgatttaattcattttatttatctcttattttattggatatggcaatgaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agtaaatgatttaattcattttatttatctcttattttattggatatggcaatgaaattt 247

                                                                       
Query: 61  aaactccagttaataaatctgtttgtctttggtcctatctgagggcagcatctaatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaactccagttaataaatctgtttgtctttggtcctatctgagggcagcatctaatacag 307

                                                                       
Query: 121 tgaccttaaaccttctgaatgagtgtgacattctattagaattgaaaaaaaa-ttaaatg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 tgaccttaaaccttctgaatgagtgtgacattctattagaattgaaaaaaaaattaaatg 367

                                                                       
Query: 180 caag--tct----------ctgaggcagtgttcataatgttcttaccctccctaagaaga 227
           ||||  |||          ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 368 caagcctctgaggcaggatctgaggcagtgttcataatgttcttacactccctaagaaga 427

                                                                       
Query: 228 agtgctttcaaaagcttcttcaaagtaattatgtgaattaatatatccctgactaagaaa 287
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtgctttcaaaagcaccttcaaagtaattatgtgaattaatatatccctgactaagaaa 487

                                                                       
Query: 288 atattaagtatccactccggctgacattttagatatatgtatttcttcttagatgcatat 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atattaagtatccactccggctgacattttagatatatgtatttcttcttagatgcatat 547

                         
Query: 348 ttcagaaaatttgc 361
           ||||||||||||||
Sbjct: 548 ttcagaaaatttgc 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)