Query= MSMg01no532_n19.b1 MSMg01no532_n19.b1 CHROMAT_FILE:
MSMg01no532_n19.b1 PHD_FILE: MSMg01no532_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:54 2005
(632 letters)
>mm_chr17_22528778_22529810
Length = 1033
Score = 1116 bits (577), Expect = 0.0
Identities = 616/629 (97%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 5 gaattcatggctagaccctcatgaattcaggtacttttcaatgatccaagaacacactct 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 833 gaattcatggctagaccctcatgaattcaggtacttttcaatgatctaagaacacactct 774
Query: 65 accacaggcaaacacctgaactttaggagacattctgaccacataaaacaagttgtgtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 accacaggcaaacacctgaactttaggagacattctgaccacataaaacaagttgtgtga 714
Query: 125 ttaatttttagcaaagcaaacttggcaaatgttatgtattccactgactatacatgtaat 184
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 713 ttaatttttagcaaagcaaacttgacaagtgttatgtattccactgactatacatgtaat 654
Query: 185 gccttctgtcaagtgttacatctcaggtcgtggcttgagtttaatacagagcacatgagt 244
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct: 653 gccttctgtcaagtgttacatctcaggtcgtggcttgagtttagtacagagcacttgact 594
Query: 245 aatactgaggtcaccctttttgttcaactcaggttgagctggaagactggtttttcaatt 304
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 593 aatactgaggtcaccctttttgttcaactcaggttgagctggaagacccgtttttcaatt 534
Query: 305 tctgaatctccttatgcaaattctgtggtctttgcttttattacatgtaaaaatcagttc 364
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 533 tctgaatctccttatgcaaatcctgtggtctttgcttttatttcatgtaaaaatcagttc 474
Query: 365 attatttaagtccacaaaatgcgaaatattatttccatgaagctcatggacattctggaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 attatttaagtccacaaaatgcgaaatattatttccatgaagctcatggacattctggaa 414
Query: 425 tggtttcatggccttgcacctgggagttaactgcaacacaaataactctgtagagaacct 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 413 tggtttcatggccttgcacctgggagttaactgcaacacaaataactctgtagagaactt 354
Query: 485 actaaggtaagctatttttttttt-aaggatggaaaagttttctcaatacaaaataaaaa 543
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 353 actaaggtaagctatttttttttttaaggatggaaaagttttctcaatgcaaaataaaaa 294
Query: 544 cctgatttttatttttaagagtcattttaaggggtaccagataggaaacctatgacacgc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctgatttttatttttaagagtcattttaaggggtaccagataggaaacctatgacacgc 234
Query: 604 cacactatggatattacaaaattgcaact 632
|||||||||||||||||||||||||||||
Sbjct: 233 cacactatggatattacaaaattgcaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_n19.g1 MSMg01no532_n19.g1 CHROMAT_FILE:
MSMg01no532_n19.g1 PHD_FILE: MSMg01no532_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:54 2005
(643 letters)
>mm_chr17_22503051_22504093
Length = 1043
Score = 1151 bits (595), Expect = 0.0
Identities = 628/643 (97%), Gaps = 7/643 (1%)
Strand = Plus / Plus
Query: 1 ttataggaccatcattaagaattaagaaatcatctatttgtctatatagcatcactgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttataggaccatcattaagaattaagaaatcatctatttgtctatatagcatcactgtaa 260
Query: 61 gacagtacatcttccttgttctgcacaaatctgcttataaggatgggttaatacctagtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gacagtacatcttccttgttctgcacaaatctgcttataaggatgggttaatacctcgtg 320
Query: 121 attattatatatctttattaacaacaggaaaatcatattaatagcaggaatctttactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attattatatatctttattaacaacaggaaaatcatattaatagcaggaatctttactca 380
Query: 181 aatgtaatctccttggccttgcctaaaggagtgaattcatcataagtttacagtccatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtaatctccttggccttgcctaaaggagtgaattcatcataagtttacagtccatgg 440
Query: 241 aggaaccctctcaggaagatcacctgctagtttttggcttcttctagctggctcctggca 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aggaagcctctcaggaagatcacctgctagtttttggcttcttctagctggcttctggca 500
Query: 301 gtttcgggaattttatatatgtttgcatcatgtgtttgatcaaattcaccacatcttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttcgggaattttatatatgtttgcatcatgtgtttgatcaaattcaccacatcttcct 560
Query: 361 catctctaatttcccagtctagtaatgctttttcacatctccatattcacagtttttaaa 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 561 catctctaatttcccattctagtaatgctttttcacatctccatattcacag-------a 613
Query: 421 actactgggttaatttcatgcttagctttatgtgtgtgagccacatctctgaagaaaatt 480
| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 614 agtactgggttaatttaatgcttagctttatgtgtgtgggccacatctctgaagaaaatt 673
Query: 481 tcctctgtctcttccaaggacatgattttcctataatatctctgatagtggtatgatgat 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcctctgcctcttccaaggacatgattttcctataatatctctgatagtggtatgatgat 733
Query: 541 acttttaacccaggttggcatttaagctgggttaatactgtatagtgtatttgcctttag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acttttaacccaggttggcatttaagctgggttaatactgtatagtgtatttgcctttag 793
Query: 601 gcacaggttacatggaattggttgtacagtgacaatcatgtga 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcacaggttacatggaattggttgtacagtgacaatcatgtga 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
