BAC Information

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BAC

Clone NameMSMg01-532P09
Chromosome17 (Build37)
Map Location 14,804,635 - 14,805,227
singlet/doubletsinglet
Overlap geneThbs2
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
Downstream geneLOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532P09.T7 (MSMg01no532_p09.b1)MSMg01-532P09.TJ (MSMg01no532_p09.g1)
ACCAG600996AG600997
length749751
length of high quality
(start - end)
681 (50 - 730)605 (82 - 686)
definitionCHROMAT_FILE: MSMg01no532_p09.b1 PHD_FILE: MSMg01no532_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:02 2005CHROMAT_FILE: MSMg01no532_p09.g1 PHD_FILE: MSMg01no532_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGAAGTCTTAAATGAAGGAAGAGATTTAGGCAAATGTCA
AAGACTGATGGCCCAAAAGTGGCTTGAATACACACTTCTCTGTATGGTCA
TCAGGTATATGCAAAAGGGCTATGCCATCAATACAAAGGAAAAGCAAACA
GAACCACTAGGAGACACCACTTGACACACATCAAAAAGACCAGGGGCAGT
TCTGGAGAGGTGGCTCAGATCTTCTTAACAATCAAAAGGACAAAGTGTAG
ATGGGACTGGAGAAGAGGCTCAGCTGTTAAGAGTGTGGGCTCCTCATGGT
TCCTAGCAGCTATGATGGGTGATGCACAACTGCCTGTTACTTAAGTCCTA
GGGTATTTGGACATTCTGTTCTGGCCTCCGTGAGCATCTTCACTCATGTG
CATCTATCTCTCGACAGATGTGTACACATACACAACTAAAAATAAAATAC
TTCATAAAGATGGGTGATGACAAATGTGGGTGAGGATGTAGAATATTGGA
ATCTTACACATTGTTGCCAGAGATGTATGCAGACAGTATGGTATGCCCTC
AAAACACAAAAACAAAGCACCGTCCTCCCTCCAAATCTACCCTGTTATTC
AGCAATGTCGCTACCGGGCCTTTATTCAAAGAATTGGAATCAACAGCTCC
AAGAGATCATTGTATCTCGGTGCTTATGGCAACATTGTCACACCTGTGA
TTTTTTCATGTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATATAGTTTAGACTGG
CCTCAGGGCTCCCCAAGGCTAATATTACATACATGGCCTCAGATACCATT
TTTTAACTTTAGGATTGCATACATGAGATAGATAAGTAGAACAGATTGAT
AAATGACAGAGAGGTGTGTGGACAAACAAGTAGATGAGTGAATAGATAGA
AAGACAGAAGGGTGAATGGACAGATGGATAAGTAGGCATTTGGATGGATA
GATGGATAAATAGCTGTTTGGAAAGATGCATATGTAGATTGATGTATTAA
TGGGTGGATAAGTTAAGAAAAAAGAAATCTCTTCAGTGGAATGGTGACAT
GTGTAAAGATCTTCAGTGGAAGAAGGGGAGAAAACAATGTCCTTGGCTTT
ACTTCTCCTTGATGTGTGTATCATTTTCAATGCATAAGCATTGAGAAACA
TTTTTGAGCTTTACTGATCTCTGTAAAAGGCATGTCATTAGACTTGACTG
GTCAAGTTTGCTTTCAGGTTTATATTTTGGTTCAGATAAATTAACTTCTA
GTGGTATAACTAAGAAGGGGCCACCTTTCCTCTCTCACTCCATCTTCTTT
CCTTCCTCCTTTCTACCCTTTCCCCTTCCTTTCCTTTCTTATTTCAATTT
TTAGTAGAGATAGTAATCTAAAATGACCCTAGAAATTCAGGAAGTATGGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_p09.g1 MSMg01no532_p09.g1 CHROMAT_FILE:
MSMg01no532_p09.g1 PHD_FILE: MSMg01no532_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:02 2005
         (605 letters)



>mm_chr17_14804424_14805428
          Length = 1005

 Score = 1064 bits (550), Expect = 0.0
 Identities = 583/594 (98%), Gaps = 2/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  agactggcctcagggctccccaaggctaatattacatacatggcctcagataccatt-tt 71
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 212 agactggcctcagggctccccagggctaatattacatacatggcctcagataccattatt 271

                                                                       
Query: 72  ttaactttaggattgcatacatgagatagataagtagaacagattgataaatgacagaga 131
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttaactttaggattgcgtacatgagatagataagtagaacagattgataaatgacagaga 331

                                                                       
Query: 132 ggtgtgtggacaaacaagtagatgagtgaatagatagaaagacagaagggtgaatggaca 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggtgtgtggacaaacaagtagatgagtgaatagatagaaagacagaagggtgaatggaca 391

                                                                       
Query: 192 gatggataagtaggcatttggatggatagatggataaatagctgtttggaaagatgcata 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 gatggataagtaggcatttggatggatagatggataaatagctgtttggaaagatgcatg 451

                                                                       
Query: 252 tgtagattgatgtattaatgggtggataagttaagaaaaaagaaatctcttcagtggaat 311
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 452 tgtagattgatgtattaatgggtggataagttaagaaaaaataaatctcttcagtggaat 511

                                                                       
Query: 312 ggtgacatgtgtaaagatcttcagtggaagaaggggagaaaacaatgtccttggctttac 371
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtgacatgtgtaaagatcttcagtggaagaaggggagaaaacaatgtccttggctttac 571

                                                                       
Query: 372 ttctccttgatgtgtgtatcattttcaatgcataagcattgagaaacatttttgagcttt 431
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 572 ttctccttgatgtgtgtatcattttcaatgcataagtactgagaaacatttttgagcttt 631

                                                                       
Query: 432 actgatctctgtaaaaggcatgtcattagacttgactggtcaagtttgctttcaggttta 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 actgatctctgtaaaaggcatgtcattagacttgactggtcaagtttgctttcaggttta 691

                                                                       
Query: 492 tattttggttcagataaattaacttctagtggtataactaagaaggggccacctttcctc 551
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 692 tattttggttcagataaattaacttctagtggtataactaagaaggggccgcctttcctc 751

                                                                 
Query: 552 tctcactccatcttctttccttcctcctttctaccctttccccttcctttcctt 605
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 752 cctcactccatcttctttccttcctcctttctaccctttccc-ttcctttcctt 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)