Query= MSMg01no533_h02.b1 MSMg01no533_h02.b1 CHROMAT_FILE:
MSMg01no533_h02.b1 PHD_FILE: MSMg01no533_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:39 2005
(480 letters)
>mm_chr17_43328941_43329820
Length = 880
Score = 891 bits (461), Expect = 0.0
Identities = 467/469 (99%)
Strand = Plus / Plus
Query: 12 gaattcttatcccactgaaaggaatagacatttccctacatgaagagttgtaaagtggtg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcttatcccactgaaaggaatagacatttccctacatgaagagttgtaaagtggtg 271
Query: 72 gttggtcccattgcatgcacagagagtgagagacgggtaacctgtgagacacctcctaca 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gttggtcccattgcatgcacagagagtgagagacgggtaacctgtgagacacctcctaca 331
Query: 132 taaaaagagttccagtgatcttcaaagtgtttgtcactcacccagaaaaactccagctcc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taaaaagagttccagtgatcttcaaagtgtttgtcactcacccagaaaaactccagctcc 391
Query: 192 tcactaccaagcctaggaaaggaagacagaaatacctagagaggaattccaatcacctca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tcactaccaagcctaggaaaggaagacagaaatacctagagaggaattccaatcacctca 451
Query: 252 agaaaaatggagtagtgaccagcttcagcctctgagttttgagatggagactctgagata 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 agaaaaatggagtagtgaccagcttcagcctctgagttttgagatggagactctgagaga 511
Query: 312 gctgtcaatattttgtaaaaccgtttcccactcgatagcattcccagagtgaaggttttt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gctgtcaatattttgtaaaaccgtttcccactcgatagcattcccagagtgaaggttttt 571
Query: 372 ctctcctcagccatgagctaggcttctggatttctacatcctgtttcatttgtgttcttc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctctcctcagccatgagctaggcttctggatttctacatcctgtttcatttgtgttcttc 631
Query: 432 ctcctacatttaagtgtaagcttgaatgagcgtctcagttcacttccca 480
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctcctatatttaagtgtaagcttgaatgagcgtctcagttcacttccca 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_h02.g1 MSMg01no533_h02.g1 CHROMAT_FILE:
MSMg01no533_h02.g1 PHD_FILE: MSMg01no533_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:39 2005
(642 letters)
>mm_chr17_43487500_43488540
Length = 1041
Score = 928 bits (480), Expect = 0.0
Identities = 543/584 (92%), Gaps = 32/584 (5%)
Strand = Plus / Minus
Query: 1 aattctgggagcccacaaggtaaaggagagaacctattctcagagcttgtccgcagcatg 60
|||||| ||| |||||||||| |||||||||||| | ||||||||||||||| |||||||
Sbjct: 552 aattct-ggaacccacaaggtgaaggagagaaccgactctcagagcttgtccacagcatg 494
Query: 61 tgcacacgtgtaaaaatcaaaagtagattcacttcttgaggaataatcaataccactgtt 120
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 tgcacatgtgtaaaaatcaaaagtagactcacttcttgaggaataatcaataccactgtt 434
Query: 121 tgtgtattgtgtggaagacactttgttagagtggctgatgtgacatccatcactcggtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtgtattgtgtggaagacactttgttagagtggctgatgtgacatccatcactcggtcc 374
Query: 181 tgagaacaaccaaaaggcaaggttgtccacctttgaagggagtagtaatcagagaggatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgagaacaaccaaaaggcaaggttgtccacctttgaagggagtagtaatcagagaggata 314
Query: 241 tctctggctctaactgtgcttcagggtcctgtacaatgagtttttggctctcccttgagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tctctggctctaactgtgcttcagggtcctgtacaatgagtttttggctctcccttgagt 254
Query: 301 tagcaaagaagggaaaaatgaagtaaaaatgaatcaaagagttccttaagcaatctataa 360
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tagcaaagaagggaaaaatgaagtaaaaatgaatcaaagagttcctt------------- 207
Query: 361 ggcctttatagtgtccctgagcaacagaaataaacctagaaaagtaataatcctagtaac 420
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ------------------gagcaacagaaataaacctagaaaagtaataatcctagtaac 165
Query: 421 aaagagtttaaaacttgaaaatcaataaactcagagaagtagatcattctgttgaaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaagagtttaaaacttgaaaatcaataaactcagagaagtagatcattctgttgaaatct 105
Query: 481 agtgtctagaaggtcccagtgtgcacagaggtgagagctgagcagtttcgggagtgaaca 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 104 agtgtctagaaggtcccagtgagcacagaggtgagagctgagcagtttcgggagtgaaca 45
Query: 541 cagctcactgaatttgccctaattcaccggaaacctggttttgc 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 cagctcactgaatttgccctaattcaccggaaacctggttttgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space: 651592
Effective search space used: 651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
