GAAGGTNAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGT
TCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATC
AATTCGCATTCTTCTGCACGATAACAACCAGTTGTGCCAGCACCAATTGT
TGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAG
ATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATT
CCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCA
CAATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCACCAGAG
GTTCTTTTATCCTTGAGAAGAGTTTTTG

NTTTTCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGATTGTTGATT
GGAAACTGAGTTTTACAATGCTGTCTTTGCTGGCTTCCAACTTAATACAT
AGCTCAAACTGAGCTGGAATTCTCAGTTCGTTTTGTGCAGTCTCTTGAGT
ACTAGGAAAATGTTGTATGTTAACACTCAGTGTTATTACATGTTATTACA
TATGACCCAGTCTGACACAAGGATGGTGCTTCTGGCACCAAGATACACCA
TCAAGTTTTGACTTTGTGAAGCCTATTCCTAGTTAAAAAGGCAGATGTGA
TTGTTGAGAAAGCCGGTTTAAAAAGGCAAGAGAGCTCTGTTTCAGACATC
CAAGAGTATTTCTATCATCCATTTCAAGTTCTGTACATTCTCCATAACTA
TGTCTTGTGTTATAAATATACCTAAAGAAAATGATGACTAGCAGCTCCCT
TATCACGAAGGAAGTAGTCTAACTTATTTGAAATATAAAATAAGGAAAGA
AAGACAGGGAGAAAATGGAGTGAAAGAAAAGATTGTAAGTCTATCTGCCA
TTTTATACTCACATATATATCCATATATGTCTTTCTTCTAATTGATAGAT
CAAAGTGTCTTCTTTTCTCACTAATTTGGCCTGGTTCTATGCCTTTCTAT
GATCATTAGAAAGTGATAGAAGGAATGTGN

Query= MSMg01no533_k14.g1 MSMg01no533_k14.g1 CHROMAT_FILE:
MSMg01no533_k14.g1 PHD_FILE: MSMg01no533_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:55 2005
         (646 letters)



>mm_chr17_52918890_52919935
          Length = 1046

 Score = 1201 bits (621), Expect = 0.0
 Identities = 639/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaagattgttgattggaaactgagttttacaatgctgtctttgctggcttccaactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 attaagattgttgattggaaactgagttttacaatgctgtctttgctggcttccaactta 786

                                                                       
Query: 61  atacatagctcaaactgagctggaattctcagttcgttttgtgcagtctcttgagtacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 atacatagctcaaactgagctggaattctcagttcgttttgtgcagtctcttgagtacta 726

                                                                       
Query: 121 ggaaaatgttgtatgttaacactcagtgttattacatgttattacatatgacccagtctg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 725 ggaaaatgttgtatgttaacactcagtgttgttacatgttattacatatgacccagtctg 666

                                                                       
Query: 181 acacaaggatggtgcttctggcaccaagatacaccatcaagttttgactttgtgaagcct 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 665 acacaaggatggtgcttctggcaccaagatacatcatcaagttttgactttgtgaagcct 606

                                                                       
Query: 241 attcctagttaaaaaggcagatgtgattgttgagaaagccggtttaaaaaggcaagagag 300
           | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 605 actcctagttaaaaagacagatgtgattgttgagaaagctggtttaaaaaggcaagagag 546

                                                                       
Query: 301 ctctgtttcagacatccaagagtatttctatcatccatttcaagttctgtacattctcca 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 545 ctctgtttcagacatccaagagtatttctatcatgcatttcaagttctgtacattctcca 486

                                                                       
Query: 361 taactatgtcttgtgttataaatatacctaaagaaaatgatgactagcagctcccttatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taactatgtcttgtgttataaatatacctaaagaaaatgatgactagcagctcccttatc 426

                                                                       
Query: 421 acgaaggaagtagtctaacttatttgaaatataaaataaggaaagaaagacagggagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acgaaggaagtagtctaacttatttgaaatataaaataaggaaagaaagacagggagaaa 366

                                                                       
Query: 481 atggagtgaaagaaaagattgtaagtctatctgccattttatactcacatatatatccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atggagtgaaagaaaagattgtaagtctatctgccattttatactcacatatatatccat 306

                                                                       
Query: 541 atatgtctttcttctaattgatagatcaaagtgtcttcttttctcactaatttggcctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atatgtctttcttctaattgatagatcaaagtgtcttcttttctcactaatttggcctgg 246

                                                        
Query: 601 ttctatgcctttctatgatcattagaaagtgatagaaggaatgtg 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttctatgcctttctatgatcattagaaagtgatagaaggaatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)