Query= MSMg01no534_h06.b1 MSMg01no534_h06.b1 CHROMAT_FILE:
MSMg01no534_h06.b1 PHD_FILE: MSMg01no534_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:59 2005
(628 letters)
>mm_chr17_86910453_86911480
Length = 1028
Score = 791 bits (409), Expect = 0.0
Identities = 421/425 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagttcctggtcagctgaaatgccaccttccatgtgcaggtggctctgaccttc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaattcagttccaggtcagctgaaatgccaccttccatgtgcaggtggctctgaccttc 366
Query: 64 agatctcttggatctccaacagttctgcaccaggttttctcacatcctgctctgcctact 123
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 365 agatctcttggatctccaacagttctgcaccaggtcttctcatatcctgctctgcctact 306
Query: 124 gccctgatagaaatcccaacccccacacttcccatcccaaccgaggaaggcttccctagg 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 gccctgatagaaatcccaacccccacacttcccatcccaaccgaggaatgcttccctagg 246
Query: 184 cccagcggtcacttgctggcccatcataaagccgactctcttggggtaggagaaatggcg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cccagcggtcacttgctggcccatcataaagccgactctcttggggtaggagaaatggcg 186
Query: 244 cagtcagacaagtacttgccaagaaagcttcaggtcctgagttcaatccccggaatccat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cagtcagacaagtacttgccaagaaagcttcaggtcctgagttcaatccccggaatccat 126
Query: 304 gcaaaacactaggtttcgtggcctttgtaatctcagtgctgggaagcaaagaccctaggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gcaaaacactaggtttcgtggcctttgtaatctcagtgctgggaagcaaagaccctaggg 66
Query: 364 actgatgactggacaacccaatccgtgagtcctgggtcatagtaagagactgtctcagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 actgatgactggacaacccaatccgtgagtcctgggtcatagtaagagactgtctcagaa 6
Query: 424 aacaa 428
|||||
Sbjct: 5 aacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_h06.g1 MSMg01no534_h06.g1 CHROMAT_FILE:
MSMg01no534_h06.g1 PHD_FILE: MSMg01no534_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:59 2005
(628 letters)
>mm_chr17_86763044_86764070
Length = 1027
Score = 1067 bits (552), Expect = 0.0
Identities = 612/640 (95%), Gaps = 17/640 (2%)
Strand = Plus / Plus
Query: 1 ctttgaaattgtgagaaagtgagttcaagggaaattatcttcacttttagggtttgcaca 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctttgaaattgtgaggaagtgagttcaagggaaattatcttcacttttagggtttgcaca 252
Query: 61 catgtctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgta 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ca--tctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgt- 309
Query: 121 agag----agagagagagagacagagagagacacacagagagagacacacagagagacag 176
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 -gtgtgtaagagagagagagacagagagagacacacagagagagacacacagagagacag 368
Query: 177 --------agagtgacagagtcagagagagacagagagagacacacagagagacagagag 228
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agagagacagagagacagagtcagagagagacagagagagacacacagagagacagagag 428
Query: 229 agacagagagagattagaatctttattttagttcttactttacagtgagctaatctcatg 288
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 429 agacagagagagattagaatctttattttagttcctactttacagtgagctaatcttatg 488
Query: 289 gtttaccaatacatacaacaagtatatactgagctgagctcggtgcctcacacctttaac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtttaccaatacatacaacaagtatatactgagctgagctcggtgcctcacacctttaac 548
Query: 349 cccagtgctggccaggcagaagcagacacatatttgtgagttcaaggtcagcctgttcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cccagtgctggccaggcagaagcagacacatatttgtgagttcaaggtcagcctgttcta 608
Query: 409 cagaacaagacttggccatccacgcctagatactgaaatcctgtctcaaacgaaacaaaa 468
|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct: 609 cagaacaagacttggccatccaagcctagatactgaaaccctgtctcaaacaaaacaaaa 668
Query: 469 caattgtatactctgactccaccgtctgctgggcaccagtgaaaagggcagaggtctgga 528
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct: 669 caattgtatactctgactccaccgtctgctgggcaccggcgaaaaaggcagaggtctgga 728
Query: 529 gaatgtctagcaacaagccccgtagtctctttggttccaggtggtcttctcgctgcacag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaatgtctagcaacaagccccgtagtctctttggttccaggtggtcttctcgctgcacag 788
Query: 589 ggtgaggatgtgctgtgtagtttttttcctgtgcctttaa 628
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 789 ggtgaggatgtgctgtgtagtttttt-cctgtgcctttaa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
