BAC Information

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BAC

Clone NameMSMg01-534L14
Chromosome17 (Build37)
Map Location 76,180,531 - 76,181,235
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc27, LOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787
Downstream geneLOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534L14.T7 (MSMg01no534_l14.b1)MSMg01-534L14.TJ (MSMg01no534_l14.g1)
ACCAG602342AG602343
length7641,187
length of high quality
(start - end)		712 (36 - 747)---
definitionCHROMAT_FILE: MSMg01no534_l14.b1 PHD_FILE: MSMg01no534_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:20 2005CHROMAT_FILE: MSMg01no534_l14.g1 PHD_FILE: MSMg01no534_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAT
TTAAAAGGAAGGAAACCTTGAAACATCCTGCTTCTTGGAAAAGATCAACC
TGGAACCTAAATATAACCTGGAATTGGCACAGCAGATGAATACAGATTAA
ATCCCACCAATTCTCACTGCCCTTATCTATGGAGCAGTAAGTTCAACTTT
CTGTGGCTATACAAACAGACACCCCTTGCCAGCCATTTAGTGATAAGTGA
AACCACTTGCCTTTCTGGGTTTTGTTTTGTTCATTTTGTTATAAAGCCAA
CATTTAACATGGTTCTGAGTAAATTGATATACCTATTCTCCACCAATTTT
GACTAGTTTAGAAATATTTTTATTGAAAATGTATTAAAACCCTCATTCTC
ATAGTCAGAGTTGACATAAAAATCCAGAGAATTGAAAAGGATTCAGTACT
TCATGCAAAGAACATAACTAATTAGTGAAAGCTAATCTGTTGTACACGAT
TAACCGTCCATTTAATCAAAGAAGAAACACTAGAAGAAGGCTTTCTGCAT
AAATGTGCAGAGGTTGAAATACATCCACTCCAAAGTAATTCTCTGCTGAT
TGGAAAGACTGAAACACATAATTAGAGTTAGGAGTGAATACAGGCCATAA
GTCATAAGAGGGAAACCTATATGTAATATAGGATGAAATCCCATACAGAG
GAAATCCCACTCCTATGGTGTCAGGGAATGTTCCCAAATGCAGCGTGATC
ACATTCCATATAAA

AGCTTATCAATCGTGTGTGATAATAAGATTCCTCTTCAACAGACGNGCGC
GCCTTTCATCTTACTGGATTCCCCGCGAAATTAGCTAACGATAGGTGCGG
CGCTGCGCGACGTGCCCCATGAGCTGCGTCGAGCGCACTACGAATTCCTC
ATCAGTTATTTGCACGCGGGAGCCCGTAACGCCTGTCTAGACCATCATCG
TTTAGTACTTATTCCTGCCTGCCACCTACAGTTCGCGCCGGAGGTCCCCG
TCGTGCAGCTTAAACATAGTGCGGTCAGAAGGTATTGCCTGGTGTAACAA
GCACGTTCGCCAGTACTCTCATGTACGGTGAGATTTAGTAACATACGAGC
TATAGCATTTATTCGTTATTAACGCGCTTCGTTATTTTATAGACTATATT
AACGAATCATACGACAATATATATGCGTGCACTGAGGCATTATACATTTT
ACTCACAGTGAATGTAACACGATGTTTCCGTAATGTCAATTAACTGAACG
AGATGACAACGCTCCCGATGGTACACGAANGCACCCGTGCTTCAGTATCG
GGCTCGCCCGGGCAGATAGATTCTCGATCGTTGTGTAAGTGATGGCGTAA
ACGATGTTAGAATTATTAAACACCAATCAGACATGGATACAATCCTCTCT
ACTTTCGCCGCCCGACGCAATAGCCTATCTGTTTAACAATTCATACTACA
CGTGTTCACTGCACACTATGCACATAACCACCCAAGAATATACAACGTAT
TGCACCTCCGTTCGCGCCGGACTCGTGTACGCAGTCATTTTGTATAANCC
CCACGCCGCCCGTTTATCAATATACCACCGTGGTCGACATGAGAGAAACC
CGACGTTACAAGCATATATAACACTGTGTTATCGATGTGGGGCAATGTGG
TGCACAGCACACGTATCAATAACCCTCGGCATAATAAGATACATGCGCGC
GCCTGTTGACACACATCTACTCCTGCGTAGAGGCCCGCCCTTCACACCCC
ACTTTATACCATTATAACATACATGACGGTCACCATGGTACCGACACGAT
AATAGAAACGCATGCNGATAAGAGCGCGCGACANCGCTATGTGGAGATAC
TCCTTACCGACAAGTATAATGGGTTAATCACAGAGAAACGCGCGNAGTAA
CATAAATCGCCTATGACGCTTTACTGTCTATCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_l14.b1 MSMg01no534_l14.b1 CHROMAT_FILE:
MSMg01no534_l14.b1 PHD_FILE: MSMg01no534_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:20 2005
         (712 letters)



>mm_chr17_76180124_76181235
          Length = 1112

 Score = 1189 bits (615), Expect = 0.0
 Identities = 673/705 (95%), Gaps = 20/705 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   aaaccttgaaacatcctgcttcttggaaaagatcaacctggaacctaaatataacctgga 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 aaaccttgaaacatcctgcttcttggaaaagatcaacctggaacctaaatataacctgga 1053

                                                                        
Query: 88   attggcacagcagatgaatacagattaaatcccaccaattctcactgcccttatctatgg 147
            |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1052 attggcacagcaaatgaatacagattaaatcccaccaattcgcactgcccttatctatgg 993

                                                                        
Query: 148  agcagtaagttcaactttctgtggctatacaaacagacaccccttgccagccatttagtg 207
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 992  agcagtaagttcaactttctgtggctgtacaaacagacaccccttgccagccatttagtg 933

                                                                        
Query: 208  --------------------ataagtgaaaccacttgcctttctgggttttgttttgttc 247
                                ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 932  ataccccatgtcgatgttatataagtgaaaccagttgcctttctgggttttgttttgttc 873

                                                                        
Query: 248  attttgttataaagccaacatttaacatggttctgagtaaattgatatacctattctcca 307
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  attttgttataaggccaacatttaacatggttctgagtaaattgatatacctattctcca 813

                                                                        
Query: 308  ccaattttgactagtttagaaatatttttattgaaaatgtattaaaaccctcattctcat 367
            |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 812  ccaattttgactagtttagaaatattttcattgaaaatgtgttaaaaccctcattctcat 753

                                                                        
Query: 368  agtcagagttgacataaaaatccagagaattgaaaaggattcagtacttcatgcaaagaa 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  agtcagagttgacataaaaatccagagaattgaaaaggattcagtacttcatgcaaagaa 693

                                                                        
Query: 428  cataactaattagtgaaagctaatctgttgtacacgattaaccgtccatttaatcaaaga 487
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 692  cataactaattagtgaaagctaatctgttgtacaagattaaccgtccatttaatccaaga 633

                                                                        
Query: 488  agaaacactagaagaaggctttctgcataaatgtgcagaggttgaaatacatccactcca 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  agaaacactagaagaaggctttctgcataaatgtgcagaggttgaaatacatccactcca 573

                                                                        
Query: 548  aagtaattctctgctgattggaaagactgaaacacataattagagttaggagtgaataca 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  aagtaattctctgctgattggaaagactgaaacacataattagagttaggagtgaataca 513

                                                                        
Query: 608  ggccataagtcataagagggaaacctatatgtaatataggatgaaatcccatacagagga 667
            ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  ggtgataagtcataagaggaaaacctatatgtaatataggatgaaatcccatacagagga 453

                                                         
Query: 668  aatcccactcctatggtgtcagggaatgttcccaaatgcagcgtg 712
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  aatcccactcctatggtgtcagggaatgttcccaaatgcagcgtg 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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