BAC Information

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BAC

Clone NameMSMg01-534P19
Chromosome17 (Build37)
Map Location 22,446,455 - 22,447,055
singlet/doubletsinglet
Overlap geneEG631624
Upstream geneV1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038
Downstream gene6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P19.T7 (MSMg01no534_p19.b1)MSMg01-534P19.TJ (MSMg01no534_p19.g1)
ACCAG602543AG602544
length753748
length of high quality
(start - end)		608 (43 - 650)589 (71 - 659)
definitionCHROMAT_FILE: MSMg01no534_p19.b1 PHD_FILE: MSMg01no534_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:40 2005CHROMAT_FILE: MSMg01no534_p19.g1 PHD_FILE: MSMg01no534_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTATCATACCTGGTTCCTTGGCTATAGTCTCCTCTGTGTTCACCAT
CCAGGGCTCTTAGTTCTGATTAACAGGTGAGCAGATCTGACTGAGCAGTT
GGAGACCTACATATAAGAAGGACATACTTCTGAAAATACCTGGAACTATT
CATGGAACAAAAATGAAAGAAGCTCACATCTATCAAAATGATAATCACAA
AGGAAAGAGAAAATACCAGGATAAATGTTTCTGAGAGCAAGTGAAAGACT
TGTATATTAAAAACTTCAATTCTTTGAAGAAATTGAAGACAATAATAAGA
GATAGAAAGATCTCCCATGCTCATGGAGCAAGAGGATTAAAATACTAAAA
ATAAATAAATGAATAAATAAATAAATAAATAAATAAAGAGCCACCCTACT
AAAAGCAATCTTCAGATTCAAGACATTTCTCATACAAATTCCAACTCAAG
TCTTATGGATTTTAAATGGGCAACTGCACTTTCAATACATAAACAAAAAA
TGTACAATAGCTAAAACAATCCTGAACAATAATAGAACTTCTACAGTTCT
CCCAACATTTCCAATTTCAAGTTTTCTACAGCACTATAGGATAAAAACCT
CGAAAATATTGGCAGAAATAGCCACAGTGATTAACGAATATGAACTGAAG
ACCTAGACATATATATATTTGGCCACCTTATTCTTGATAAAAAACACAGA
AAN

CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAGGAATTCAGGGAGAAGTTTACCTATT
CAGTAACATTCAAATTTACTTCTAGTAGAGATGGTGAAACTAATTAGGCA
TTACAAAGATCGGAGCTAGAATAGCTAAGGGCTAGTCTGCAGAGTGATTA
CTTAGGACAGTAGCCAAGTCTCACCCAAACAAGGGAATACACAATGGCCT
ACTGAATAGGTAGATTAACCATGAAAGAGTTAGGGAATTCCCCCTGAGAC
AGGGTTCTTCACTAGGCCCAAAGGAACAGCATAATCAGGCATTTACTAAG
AACCCCTGATGGTGGGCTTAACAATAGACTAGCATTACACCTGGCTCCCT
TCTTAGTGGTAAACAGTGTCTGATCCCCGCCATCTTTTGTTGTATACATT
CCTTTTGTTTTGTGTCACTGTAACTCTGTGGATGTGTCCCGCCTGGCTTT
TCTTGTTTTTCTTCTGTATAAAAAGTCTGGTGTTCATTTGAATGATACAC
TCAGATTCAACACACTCTCTCGTGTTGTGTCTGTTGGTCATTCACCGACT
CCTCCCACCTGCAACCAGAGACCCATTCCGCCCAGATAGGAGACCAAAAA
AAAAAGGAGGTTAGTGTGCATCAGTTGGTGCCCGAAAAGGCACTAGGACA
GGAATTTCCCTAAAGAACTATTTATGAACAGGTCCACTTCCCCATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p19.b1 MSMg01no534_p19.b1 CHROMAT_FILE:
MSMg01no534_p19.b1 PHD_FILE: MSMg01no534_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:40 2005
         (608 letters)



>mm_chr17_22446251_22447258
          Length = 1008

 Score =  965 bits (499), Expect = 0.0
 Identities = 579/607 (95%), Gaps = 9/607 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctatcatacctggttccttggctatagtctcctctgtgttcaccatccaggg 64
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcttctaacatacctggttccttggctatagtttcctctgtgttcaccatccaggg 264

                                                                       
Query: 65  ctcttagttctgattaacaggtgagcagatctgactgagcagttggagacctacatataa 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 265 ctcttagttctgattaacaggtgagcagatctgactgagcagttagagacctacaaataa 324

                                                                       
Query: 125 gaaggacatacttctgaaaatacctggaactattcatggaacaaaaatgaaagaagctca 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 gaaggacatacttctgaaaatacctggaacttttcatggaacaaaaatgaaagaagctca 384

                                                                       
Query: 185 catctatcaaaatgata-atcacaaaggaaagagaaaa-taccaggataaatgtttctga 242
           | ||| ||||||||||| | |||||||||||||||||| |||||||||||||  ||||||
Sbjct: 385 cttctgtcaaaatgataca-cacaaaggaaagagaaaaataccaggataaatacttctga 443

                                                                       
Query: 243 gagcaagtgaaagacttgtatattaaaaacttcaattctttgaagaaattgaagacaata 302
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagcaagtgaaagacttgtataataaaaacttcaattctttgaagaaattgaagacaata 503

                                                                       
Query: 303 ataagagatagaaagatctcccatgctcatggagcaagaggattaaaatactaaaaataa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataagagatagaaagatctcccatgctcatggagcaagaggattaaaatactaaaaataa 563

                                                                       
Query: 363 ataaatgaataaataaataaataaataaataaagagccaccctactaaaagcaatcttca 422
           |||||||||||| ||||||||| ||||| |   |||||||||||||||||||||||||||
Sbjct: 564 ataaatgaataa-taaataaatgaataa-t---gagccaccctactaaaagcaatcttca 618

                                                                       
Query: 423 gattcaagacatttctcatacaaattccaactcaagtctt-atggattttaaatgggcaa 481
           |||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 619 gattcaagacatttcttatacaaattccaacacaagtctttatggatttcaaatgggcaa 678

                                                                       
Query: 482 ctgcactttcaatacataaacaaaaaatgtacaatagctaaaacaatcctgaacaataat 541
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 679 ctgcactttcaatacataaacaaaaaatgtacaatggctaaaacaatcctgaacaataat 738

                                                                       
Query: 542 agaacttctacagttctcccaacatttccaatttcaagttttctacagcactataggata 601
           |||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| 
Sbjct: 739 agaacttctacagttctctcaacatttccaatttcaacctttctacagcactataggatc 798

                  
Query: 602 aaaacct 608
           |||||||
Sbjct: 799 aaaacct 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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