NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCAAGGCCCATTTCCAAACATGATAAATGAAATCTACAGTAAAC
CAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTAGAAGCAATTGCAGTA
AAATCAGAGACTAGACCAGCCTGCCCACTTTCTCCGTACCTATTCAACAT
TGTACTTGAAGTCCTAGCCAGAGCAATTCTAAAACAAAAGAGATCAAGGG
GATACAAATTAGAAAGCAAGAAGTCAAATATAACTTTTTGCAGATGATAC
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTTAAACAAG
TCAATGACCTTTCTCTACACAAAGGATAAACAAGCTGAGAAAGAAATTAG
GGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACTTTGGCG
TGACTCTAATTAAGGAAGTGAAAGTTCTCTATGATAAGAATTTCAAGTCT
CTGAATAATGAAATTAAAGATCTCAGAAGATGGAAAGGTCTCCTATGCTC
ATGGATTGGCAGTATCAATATAGTAAAAATGACTATCTTGCCAAAAGCAA
TCAACAGATTTAATGCAATCCCCATCAAAATTACAACTCAATTCTTCAAC
GAATTAAAAAGGGAAATCTGCAAATTCATCTGGAATAACAAAAAACCTAG
AATAGCAN

NNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTTCATTTCTACACAGGT
CTATCACCCTGTCCTCAGAGGGAGACTGTGGGGGGAAAAAGATTCAATTT
CTATTTCTTTCTTTCTTTCTTTGTTTCTTTCTTTGTTTCTTTCTTTGTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTTTTTTTCCAGTGAGCCATGCTTTTTTTTTGCTATTC
CCTATTCATAGCTTTCATCTATTCTAATTGCATATCTGGGTGCTGGGGTT
GTGATTGTGCATATATAAATATAGAAAGATCTTAGAAGAGGAATTTTAAA
GAACAGGTGCAAGTTTTGCCAACTACTACTAATATTTTCTAATTCTTTAA
TCTATTTTCACTTTTTCTCTTCAATAAGAAAATACAATCACAATGAATTG
CATACCTCATCTATTTAAGCTCACTCAACCCATCTTTTGTGAAATGGACT
ATTTTATATTTTCACTAAAGTTTAAACAACCACTGATATTTGCTCACAAT
GTCCCTTCTCAGGGAGTCACCAAGTCCTATATCGTTTATATGCTGTTAAT
GTCCACTAAGTGTGGGATACACTTTCCTTTCTTTCAGAACACATATAAAT
GTATTACTTTATATATTAAAGTCATGATGTCTTGTTTTGAATACTGTGTG
TN

Query= MSMg01no535_a09.g1 MSMg01no535_a09.g1 CHROMAT_FILE:
MSMg01no535_a09.g1 PHD_FILE: MSMg01no535_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:43 2005
         (622 letters)



>mm_chr17_40585009_40586029
          Length = 1021

 Score = 1017 bits (526), Expect = 0.0
 Identities = 579/622 (93%), Gaps = 41/622 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagttcatttctacacaggtctatcaccctgtcctcagagggagactgtggggggaaaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 ctagttcatttctacacagttctatcaccctgtcctcagagggagactgtggggggaaaa 911

                                                                       
Query: 61  agattcaatttctatttctttctttctttctttgtttctttctttgtttctttctttgtt 120
           ||||||||||||||||||||||                                    ||
Sbjct: 910 agattcaatttctatttctttc------------------------------------tt 887

                                                                       
Query: 121 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 827

                                                                       
Query: 181 tctttttttttccagtgagccatgctttttttttgctattccctattcatagctttcatc 240
           ||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 826 tc----tttttccagtgagccatgc-ttttttttgctattccctattcatagctttcatc 772

                                                                       
Query: 241 tattctaattgcatatctgggtgctggggttgtgattgtgcatatataaatatagaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tattctaattgcatatctgggtgctggggttgtgattgtgcatatataaatatagaaaga 712

                                                                       
Query: 301 tcttagaagaggaattttaaagaacaggtgcaagttttgccaactactactaatattttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tcttagaagaggaattttaaagaacaggtgcaagttttgccaactactactaatattttc 652

                                                                       
Query: 361 taattctttaatctattttcactttttctcttcaataagaaaatacaatcacaatgaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 taattctttaatctattttcactttttctcttcaataagaaaatacaatcacaatgaatt 592

                                                                       
Query: 421 gcatacctcatctatttaagctcactcaacccatcttttgtgaaatggactattttatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gcatacctcatctatttaagctcactcaacccatcttttgtgaaatggactattttatat 532

                                                                       
Query: 481 tttcactaaagtttaaacaaccactgatatttgctcacaatgtcccttctcagggagtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttcactaaagtttaaacaaccactgatatttgctcacaatgtcccttctcagggagtca 472

                                                                       
Query: 541 ccaagtcctatatcgtttatatgctgttaatgtccactaagtgtgggatacactttcctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccaagtcctatatcgtttatatgctgttaatgtccactaagtgtgggatacactttcctt 412

                                 
Query: 601 tctttcagaacacatataaatg 622
           ||||||||| ||||||||||||
Sbjct: 411 tctttcagagcacatataaatg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)