BAC Information

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BAC

Clone NameMSMg01-535D16
Chromosome17 (Build37)
Map Location 47,082,377 - 47,260,151
singlet/doubletdoublet
Overlap geneUbr2, LOC100043385, EG240110
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535D16.T7 (MSMg01no535_d16.b1)MSMg01-535D16.TJ (MSMg01no535_d16.g1)
ACCAG602727AG602728
length778765
length of high quality
(start - end)		636 (48 - 683)647 (74 - 720)
definitionCHROMAT_FILE: MSMg01no535_d16.b1 PHD_FILE: MSMg01no535_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:59 2005CHROMAT_FILE: MSMg01no535_d16.g1 PHD_FILE: MSMg01no535_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,259,772 - 47,260,151)(47,082,377 - 47,083,023)
sequence
NCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCCTCTTACTAAACATTTTCTCAAATGTGTGCGGTCCCTCTC
AGATGCATCGTAAGCATTTTCAGAGGCAAAAATGGATTGACATCACTGTT
GTAATCTCAGCCCCTCCTCGGGAGAGAGGCTTGCGTAGGTCCGGCTAGCC
TCCTACTTGCTATATAATCTGGAACTTCTGATCTTCCTGCTTCTGCTTCC
TGGGTGCTGGGATGGCAGGCTGTGCTGTAATCCCCAGAATATGCAGTGCT
GGGGGTGGAACCAGGGCTTCACACATCCTTAACAAGCCCTCTACCAACTG
GGCTCCATCCCCGGCACAGCAAGCTTCAGTCGCCAACCTGACAGACTGGG
AAGAGGGACCTTGCGTTGAGAACTTGCCTCCTTTAGATGGGCCTTTAGAT
CAGGATGTGTAAGCCAAACAAGCCCTTGCCTCCCCGAGGTGTTTTTGGTT
GTGCCACTTATCCCAACAGCCAAAACAGGCAAAACAACCCCCAAACCGTT
GGTCCAAAATCAAAGATAGCACTCTCTTCATATCTCACTAGCACTAGCTC
ATACTGGAAATGTTTATTATGGAAACATTCCCTGATGCATAAAAGCAAAA
TGATGAATTTTTAATTACCTAGTGGTCTACAATCTAAGAATGACTATTGT
CGACATTTTGTGTATGAAAATGCCCAATGAGAAGTATATTTGCCTTTAAG
AAGCTTGACTTTTTATTTGTTTTGTTTG

ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTGGATGAAAGAAACAAAAAAGGG
CTAAAGGGCTCGGGAGAAAGGAGCACCCGCTGTTCTCGCAGAGGACCTGG
GTTTGGTTCCCAGAACCCACTTAGTAGCTCCTAACTGATTGCAACTCTAG
TTTCAGGGATCTGATGCCCAATTCTAGTCCCTGTAGGCATTAGGCTCACT
TGTGGTGCACAGACATACACGTAGGCAAATATTCCTACACATCAAGTTAA
GAAAAAACCCAACCGAGTCCCTCAGTAAGAAAGTGCTACAACCACAGCTA
TGCTTGTTTCTGTGGCTGCACGTACTCAGAAGCCGTAAAACAAACTAGCA
TTTTGCCCGTATACAGTTATTTCTTGATTTCTTTTTACTACTTCTTTATA
CTGCTATTCATACTAAATATTCATTTAAAGAATATGAGTGTCTGTCTCCA
TGTCTGTCTGTGCACCACACATGAGCCTGGTACTCAAGGCAGAGTCTCCC
TTAGAAGTTCTGGCTTCAGAAGGTTTCTGCCTCTGCCTGGGGTTAAGGAG
AACTGCTAAGAACATTTCTCATCAGCACCTGGTGACTGGGAGGCACAGCT
GTGAGAGTCTTACCTATGCTCTGGATGGTGTATGCACAGGTCCCCCAGCA
CAGGATGGGCACACGGGGGTCACCTTCATTAGGATGAACCTTCAGTCCCA
CCTTGTGAGCAGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_d16.b1 MSMg01no535_d16.b1 CHROMAT_FILE:
MSMg01no535_d16.b1 PHD_FILE: MSMg01no535_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:59 2005
         (636 letters)



>mm_chr17_47259116_47260151
          Length = 1036

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Minus

                                                                        
Query: 257  ggtggaaccagggcttcacacatccttaacaagccctctaccaactgggctccatccccg 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ggtggaaccagggcttcacacatccttaacaagccctctaccaactgggctccatccccg 977

                                                                        
Query: 317  gcacagcaagcttcagtcgccaacctgacagactgggaagagggaccttgcgttgagaac 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  gcacagcaagcttcagtcgccaacctgacagactgggaagagggaccttgcgttgagaac 917

                                                                        
Query: 377  ttgcctcctttagatgggcctttagatcaggatgtgtaagccaaacaagcccttgcctcc 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ttgcctcctttagatgggcctttagatcaggatgtgtaagccaaacaagcccttgcctcc 857

                                                                        
Query: 437  ccgaggtgtttttggttgtgccacttatcccaacagccaaaacaggcaaaacaaccccca 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  ccgaggtgtttttggttgtgccacttatcccaacagccaaaacaggcaaaacaaccccca 797

                                                                        
Query: 497  aaccgttggtccaaaatcaaagatagcactctcttcatatctcactagcactagctcata 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  aaccgttggtccaaaatcaaagatagcactctcttcatatctcactagcactagctcata 737

                                                                        
Query: 557  ctggaaatgtttattatggaaacattccctgatgcataaaagcaaaatgatgaattttta 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  ctggaaatgtttattatggaaacattccctgatgcataaaagcaaaatgatgaattttta 677

                                
Query: 617  attacctagtggtctacaat 636
            ||||||||||||||| ||||
Sbjct: 676  attacctagtggtctgcaat 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_d16.g1 MSMg01no535_d16.g1 CHROMAT_FILE:
MSMg01no535_d16.g1 PHD_FILE: MSMg01no535_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:59 2005
         (647 letters)



>mm_chr17_47082177_47083223
          Length = 1047

 Score = 1181 bits (611), Expect = 0.0
 Identities = 638/647 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttggatgaaagaaacaaaaaagggctaaagggctcgggagaaaggagcacccgctgt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 201 actttggatgaaagaaacaaaaaagggctaaagggctcaggagaaaggagcacccgctgc 260

                                                                       
Query: 61  tctcgcagaggacctgggtttggttcccagaacccacttagtagctcctaactgattgca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tcttgcagaggacctgggtttggttcccagaacccacttagtagctcctaactgactgca 320

                                                                       
Query: 121 actctagtttcagggatctgatgcccaattctagtccctgtaggcattaggctcacttgt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctagtttcaggggtctgatgcccaattctagtccctgtaggcattaggctcacttgt 380

                                                                       
Query: 181 ggtgcacagacatacacgtaggcaaatattcctacacatcaagttaagaaaaaacccaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgcacagacatacacgtaggcaaatattcctacacatcaagttaagaaaaaacccaac 440

                                                                       
Query: 241 cgagtccctcagtaagaaagtgctacaaccacagctatgcttgtttctgtggctgcacgt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgagttcctcagtaagaaagtgctacaaccacagctatgcttgtttctgtggctgcacgt 500

                                                                       
Query: 301 actcagaagccgtaaaacaaactagcattttgcccgtatacagttatttcttgatttctt 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcagaagctgtaaaacaaactagcattttgcccgtatacagttatttcttgatttctt 560

                                                                       
Query: 361 tttactacttctttatactgctattcatactaaatattcatttaaagaatatgagtgtct 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttactacttctttatagtgctattcatactaaatattcatttaaagaatatgagtgtct 620

                                                                       
Query: 421 gtctccatgtctgtctgtgcaccacacatgagcctggtactcaaggcagagtctccctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctccatgtctgtctgtgcaccacacatgagcctggtactcaaggcagagtctccctta 680

                                                                       
Query: 481 gaagttctggcttcagaaggtttctgcctctgcctggggttaaggagaactgctaagaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagttctggcttcagaaggtttctgcctctgcctggggttaaggagaactgctaagaac 740

                                                                       
Query: 541 atttctcatcagcacctggtgactgggaggcacagctgtgagagtcttacctatgctctg 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 atttctcatcagcacctggtgactgggaggcacagctatgagagtcttacctatgctctg 800

                                                          
Query: 601 gatggtgtatgcacaggtcccccagcacaggatgggcacacgggggt 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatggtgtatgcacaggtcccccagcacaggatgggcacacgggggt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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