Query= MSMg01no535_h19.b1 MSMg01no535_h19.b1 CHROMAT_FILE:
MSMg01no535_h19.b1 PHD_FILE: MSMg01no535_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:19 2005
(636 letters)
>mm_chr17_87650715_87651750
Length = 1036
Score = 936 bits (484), Expect = 0.0
Identities = 586/642 (91%), Gaps = 35/642 (5%)
Strand = Plus / Plus
Query: 5 gaattctcattagctggacactttgggggccaggagtagcttagtccttagtttgaactc 64
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattagctgaacactttgggagccaggagtagcttagtccttagtttgaactc 264
Query: 65 ccagcccccatgtaaaaagtgggcacatccctggacacctttagccccatgcttggaagg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagcccccatgtaaaaagtgggcacatccctggacacctttagccccatgcttggaagc 324
Query: 125 tagaacacaggttggccggtctgtgagttcccggttcagtgagagactctaggaaggtct 184
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 tagaacacaggttggcccgtctgtgagttccaggttcagtgagagactctaggaaggtct 384
Query: 185 caaagtgtctccccatacacttaaggtggggggatttttgttgccttgtgagaaaacaga 244
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaagtgtctccctgtccacttaaggtggggggatttttgttgccttgtgagaaaacaga 444
Query: 245 tgcttccagcctatcatcttgtggctgcaactgaaaaaatgtattttctccagggagcag 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 445 tgcttccagcctatcatcttgtggctacaactgaaaaaatgtattttctccagggggcag 504
Query: 305 aggttgggaacaggagggatcaggcaggcgaggggcagaatggagggggaagagtactag 364
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 aggatgggaaccggagggatcaggcaggcgaggggcaggatggagggggaagagtactag 564
Query: 365 gagagaggaccagaaaggagggccacttcagggggcaatgtggaaacctagtgcaatgga 424
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 565 gagagaggaccagaaaggaggggcacttc-gggggcaatgtggaaacctagtgcaatggg 623
Query: 425 aactccctaaaatctagagggtgcttacagcaaagatc---------------------- 462
| ||||||||||||| ||||||| |||| |||||||||
Sbjct: 624 agctccctaaaatctggagggtggttacggcaaagatctgtgcatcttctggagggtggt 683
Query: 463 ------------ctgtgcatctcctggagggtggttacggcaaagatcctgtgcattttc 510
|||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 684 tacggcaaagatctgtgcatcttctggagggtggttacggcaaagatcctgtgcatcttc 743
Query: 511 tggaaccaggcaaggcttccccgggtgagactaggtcatcaactcagccacaaaaccttt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggaaccaggcaaggcttccccgggtgagactaggtcatcaactcagccacaaaaccttt 803
Query: 571 gatctacaatatgtcctgcctgccagatgtgccagccaacca 612
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatctacaatatgtcctgcctgccagatgtgccagccaacca 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_h19.g1 MSMg01no535_h19.g1 CHROMAT_FILE:
MSMg01no535_h19.g1 PHD_FILE: MSMg01no535_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:19 2005
(478 letters)
>mm_chr17_87800790_87801669
Length = 880
Score = 717 bits (371), Expect = 0.0
Identities = 396/411 (96%), Gaps = 13/411 (3%)
Strand = Plus / Minus
Query: 15 tatattttgttcccaaagtgtaggggcttctcaggaggagtatttggaaatttggttgga 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatattttgttcccaaagtgtaggggcttctcaggaggagtatttggaaatttggttgga 341
Query: 75 aaatgatttttcacctcaaattacaagcgtaaggggttgcacagctatcgatgatttaca 134
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 aaatgatttttcacctcaaattacaagcgtaaggggttacacagctatcgatgatttaca 281
Query: 135 gttttattaacttcatacaagac--attcattactctctgagcactggtgtcctatctgt 192
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 280 gttttattaacttcatacaagacttattcattactctctgagcactggtgtcctatctgt 221
Query: 193 gtatctgaggcaggcagatcaagagttgacactggttgttgtctacgtagcgagtttgag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtatctgaggcaggcagatcaagagttgacactggttgttgtctacgtagcgagtttgag 161
Query: 253 gtcactctgatctacattgcaagctgcaaggaggggtacaaatagcacaaacaccaccaa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gtcactctgatctacattgcaagctgcaaggaggggtacaaatagcacaaacaccaccaa 101
Query: 313 catcaaaaactccaggctgaaacgggacagtgtgcctggtgcctggtgcctgcaggagtg 372
||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 100 catcaaaaactccagcctgaaacgggacagt-------gtgcctggtgcctgcagga--- 51
Query: 373 tgtgtgtgtgtgtgtgcctagaaaatgcgtgtatacatgtacatagtctca 423
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 -gtgtgtgtgtgtgtgcctagaaaatgcgtgtatacatgtacatagtctca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 880
Length adjustment: 10
Effective length of query: 468
Effective length of database: 870
Effective search space: 407160
Effective search space used: 407160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
