BAC Information

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BAC

Clone NameMSMg01-535I07
Chromosome17 (Build37)
Map Location 76,060,231 - 76,060,629
singlet/doubletsinglet
Overlap geneLOC668787
Upstream geneBirc6, Ttc27, LOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik
Downstream geneLOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535I07.T7 (MSMg01no535_i07.b1)MSMg01-535I07.TJ (MSMg01no535_i07.g1)
ACCAG602948AG602949
length784770
length of high quality
(start - end)
399 (73 - 471)627 (72 - 698)
definitionCHROMAT_FILE: MSMg01no535_i07.b1 PHD_FILE: MSMg01no535_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:21 2005CHROMAT_FILE: MSMg01no535_i07.g1 PHD_FILE: MSMg01no535_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGGATCCG
CGGAATTCAGAGATGCAATTCCGGACTTCTCAAGAGTCACATCAGCACAC
TATGTATAGACTTTAAAGGAGGAGATGCTTATTCATGAGCTAGGGCAAGG
GGGGAGGTCAAGAATTCCCAGAGTGGGAAGTCGATGAAACTTCTTCATTA
TTTGAATTTTAGTCTGGACTCCTTATATCATGCATTAGATGTAGAAAAAA
TTTCAAGGAGACAGTACTCAGTCTTGCCAAAGGTGGTTGGGGGAGGGGGT
GTAAGATGTGCCCTGAGGGCACTGGAGCCACTGTTCACTGAGCCCAGACA
TGCTGTTGCTGGCCTGCCAGCCTCCATGACCACATCATATACTAATGGTC
TTAAAAGATTCAAGGTCTAAGATGGCAACCCTCAAGAACCAGCTGATTAT
GAATCTTCTTAAGGAAAAACCAGATTATACAGAACAAGCTTATGGTTATT
GGGGTTGGTGCTGTTGGCACAGCTTGTGCCATCCGTATCTTATTGAAGGA
TTTGGCATATGAGCTTTGCTCTTGTTGATGTCATGGAAGGCAAACTGATA
GGTGAGATGATGGATTCTCCTGTCCTCTTCCTAGAACATCAAGAATTGGT
CTCATTATAGAACATTATTGTGACTGCTAACTCCAAGCTTGTGCATTTTT
CTTTTCTAGTGGTCCCATTTCCTCGGAGGGGATGTCGCTCGCTCAATTCT
CGGTGCCTTTTGTATACCTCTTTCTCCCTTTGTA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAATAAAGGCTCTCACAGCCAACCATT
AGACTGAAGTCAGAGATGCCTATGGATTAATTAGGGGAAGGATTGAAAGA
ACTGAAGAGGATGACAACCCATAGGAAGACCAACAATGTCAACTAACCTG
GACAGCTGAGAGCTCCCAGAGAGTAAGCTACCAACCAAAGAACATACACA
AACTGGTCTGAGGCCCCCACCCCAGCAGGACTGCCTGGTCTGGCCTCAGT
AGGAAAGGATGCATATAATTCTTTGAGGCTCCAAAAAGAGGGCTTCCTGG
GGTCAAGGGGAAGAGAGGGAACATCCTTGAAGAGGCAACGGGGAGGGGAA
TACGATGAAGAACTGGGGGGGGGTGGTGTTTGAGAGGGACAATGTCTGAA
ATGTAACTAAATAAAATAATTAATTAAAAATATCATTAAAAAATTGTAAA
GACTCTTTTTAAATATATTCGTGGATGAGTTACAGAAAAACAGGGATATC
ACTACAAGCGTCAGATGCTAGCTGATGGCGTTCTTAGTCTTCTCGTTGCT
GGAAGTTAGTGGTCTGTTTGTATACTCCAAAAGATGTACCTCCTGGTCAC
AGAGAGGTTAGGTTACATAGAAAAGTAAGGAATGAATGCCTGTTCAGGGG
ATGAAGCTCATCCAGGATGACTTAGACTCTGACCCTGCAGCGTTCCAACC
GTCTGAAATCTTTGACAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_i07.b1 MSMg01no535_i07.b1 CHROMAT_FILE:
MSMg01no535_i07.b1 PHD_FILE: MSMg01no535_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:21 2005
         (399 letters)



>mm_chr17_76060031_76060829
          Length = 799

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacttctcaagagtcacatcagcacactatgtatagactttaaaggaggagatgcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacttctcaagagtcacatcagcacactatgtatagactttaaaggaggagatgcttat 260

                                                                       
Query: 61  tcatgagctagggcaaggggggaggtcaagaattcccagagtgggaagtcgatgaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tcatgagctagggcaaggggggaggtcaagaattcccagagtgggaagttgatgaaactt 320

                                                                       
Query: 121 cttcattatttgaattttagtctggactccttatatcatgcattagatgtagaaaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcattatttgaattttagtctggactccttatatcatgcattagatgtagaaaaaatt 380

                                                                       
Query: 181 tcaaggagacagtactcagtcttgccaaaggtggttgggggagggggtgtaagatgtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaggagacagtactcagtcttgccaaaggtggttgggggagggggtgtaagatgtgcc 440

                                                                       
Query: 241 ctgagggcactggagccactgttcactgagcccagacatgctgttgctggcctgccagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagggcactggagccactgttcactgagcccagacatgctgttgctggcctgccagcc 500

                                                                       
Query: 301 tccatgaccacatcatatactaatggtcttaaaagattcaaggtctaagatggcaaccct 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatgaccacatcatatactaacggtcttaaaagattcaaggtctaagatggcaaccct 560

                                                  
Query: 361 caagaaccagctgattatgaatcttcttaaggaaaaacc 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagaaccagctgattatgaatcttcttaaggaaaaacc 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)