Query= MSMg01no535_m22.b1 MSMg01no535_m22.b1 CHROMAT_FILE:
MSMg01no535_m22.b1 PHD_FILE: MSMg01no535_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:43 2005
(543 letters)
>mm_chr17_44496820_44497763
Length = 944
Score = 990 bits (512), Expect = 0.0
Identities = 537/552 (97%), Gaps = 12/552 (2%)
Strand = Plus / Minus
Query: 4 ggaattccaggaagttaggagcagcagggaccataactcaaattcccttaacctcttaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaattccaggaagttaggagcagcagggaccataactcaaattcccttaacctcttaat 546
Query: 64 cctgtctccagcccctagccccccc-------ccccagctttataactgggaatgttgag 116
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 545 cctgtctccagcccctagcccccccccccccgccccagctttataactgggaatgttgag 486
Query: 117 tcatataaacattaggtaactgtcccaggagctagacagggagatggtcctagtacccca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcatataaacattaggtaactgtcccaggagctagacagggagatggtcctagtacccca 426
Query: 177 gtctctgcccccttcacaataatttcccagtatgcaattagaacccaattgtatgtataa 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 425 gtctctgcccccttcacaataatttcccagtatgcaattagaacccaattgtatgtttaa 366
Query: 237 gtccaggctagctatgaatcctagagaaaggttcaaatcttcccctaatggacttttcca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtccaggctagctatgaatcctagagaaaggttcaaatcttcccctaatggacttttcca 306
Query: 297 aaaaaaaaaaaagcatcccccatggtacctggcatagaatagcacttaataaacatttgc 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaaaaaaaaaaagcatcacccatggtacctggcatagaatagcacttaataaacatttgc 246
Query: 357 taaatgaaggagggtggcacgtgtttaattttctccctctgctccctccagaaggactga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taaatgaaggagggtggcacgtgtttaattttctccctctgctccctccagaaggactga 186
Query: 417 aataacatgtcccaaggtgctaacgtgtggtgaaatggctttcccagacaactccttgct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aataacatgtcccaaggtgctaacgtgtggtgaaatggctttcccagacaactccttgct 126
Query: 477 tcgaagttgttgg-----tttttttttttgaggctaaaccctatgtgcccatgattgagt 531
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 125 tcgaagttgttggtttttttttttttttttaggctaaaccctatgtgcccatgattgagt 66
Query: 532 agatcaggggga 543
||||||||||||
Sbjct: 65 agatcaggggga 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_m22.g1 MSMg01no535_m22.g1 CHROMAT_FILE:
MSMg01no535_m22.g1 PHD_FILE: MSMg01no535_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:44 2005
(631 letters)
>mm_chr17_44400220_44401249
Length = 1030
Score = 1025 bits (530), Expect = 0.0
Identities = 615/664 (92%), Gaps = 35/664 (5%)
Strand = Plus / Plus
Query: 1 aaggcaagttatttgtgagtgacagacatgtcatggaaggttatcacctgttgcattgga 60
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 169 aaggcaagttattcgtgagtgacagacatgtcatggaaggttgtcacctgttgcattgga 228
Query: 61 cccccaaaggcagcctggtgcttggttctgacacccctgacccaggttctg--------- 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cccccaaaggcagcctggtgcttggttctgacacccctgacccaggttctgccttggttc 288
Query: 112 -----------------------gttctctgtcctttgtggaccctgatgatgtgtgaac 148
|||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgacacccctgacccaggttctggttctctgtcctttgtggaccctgatgatgtgtgaac 348
Query: 149 atagccagaggcccagattcaacaaaggaagctaccacccctccagataagccctttcct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atagccagaggcccagattcaacaaaggaagctaccacccctccagataagccctttcct 408
Query: 209 ctcttctaaaatcctgttccagccctgacccagtggctctgaggacctcatgctttgtga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctcttctaaaatcctgttccagccctgacccagtggctctgaggacctcatgctttgtga 468
Query: 269 gtcagagaagtcatcggagacctctcactttacctgttgggtcctctcctgtgggcggct 328
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 469 gtcagagaagtcatcggagacctctcactttacccgttgggtgttctcctgtgggcggct 528
Query: 329 gaaccccacagtctacctgtttcccatttgaccccatactcagataacctgactaaggct 388
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 529 gaaccccacagtctacctgtttcccatttgaccccttactcagataacttgactaaggct 588
Query: 389 gagtccctaatcctgtacagtgactacaaacctcaggtgaggcttcactggaggcaggga 448
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 589 gagtccctaaccctgtacagtgactacaaaccttaggtgaggcttcactggaggcaggga 648
Query: 449 ggggccacactggcaaccacaaagatgaacctc-taaaaagatctccttacagcgtctct 507
||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 649 gggaccacactggcaaccacaaagatgaacctcctaaaa-gacctccttacagcgtctct 707
Query: 508 ggcttcctcaatgtgacagtactactatgtcacgtgccagcctcctctccatccccttac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggcttcctcaatgtgacagtactactatgtcacgtgccagcctcctctccatccccttac 767
Query: 568 ccctctgttcttcgtgggcatgcactgttccagcggcagctcccagtcccctggatgttt 627
|| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 768 cc-tctgttcttcctgggcgtgcactgttccagcggcagctccgagtcccctggatgttt 826
Query: 628 gggt 631
||||
Sbjct: 827 gggt 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
