NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCCATTTTCTCTGTTATTAAAAACAACCCAGACCTCGATTTGTTA
AACCCTCCAGCTAGATTCCACATTTCCCCAGCCTCTGGAAGTCTGATTAG
AAGCTGGAATGTGCTTTGGGGAAATGAGTGTGTACCTTCAAATTCCATTT
GCTGTTTTCTCTCGCGTGGAGAACAGATGTGAGAGTTTTCAATGAACTCC
TATATTAATATCCTTTTCTCATGGTAGGAGCCATGTCAGCCACCATTCCT
GAGTTCTCCAGTGGATAACTCCATGATAACTGCATGGAGAGAGGCTTACA
GAGTTGTTTTATATGTCTCATTAGCAGAGCACATAGTCAGGTTTTTAATC
ACTTCTCTGTGTCATATTTTCTTACCACTATAATGTTCACAGAGCTAGAT
TTTTTCCACCTTGAAATAGCTTATTTCTTGTTTTTTTTTCAATAATTTAT
TTTTTAAATTTACTTTAGACCCTTATCATAGCCCCCTTCTTCTCCCAGTA
CACTTTAGAAATCCCTCTCCCCATTATATCATCCCTGTTTCCTCTTTGTG
TGTCACCCCACTCTGGAATATCTAGTCCCATCAGGACTAGGCACATCCTC
TCCCACTAAGGCCAACCATGCAGTCCAAGTAGGAGGAAGGGGATCCAATG
GTAGTGAATAAAGATCAAGACACCCCTGCTTCACTTATTATGGGTCAGAC
ATGAAGATCAAATTTCCCATTTGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGCTGTGGAGAAAGAGGAACACTGCTCCATTGTTG
GTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAAGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTA
GATGCCCCTCCACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAC
ACCTAGGATACCCAAGATATAAGATATAATTTTGCTTAACACATGAACTC
AGAAGAATGAAGACTGAAGTATGGACACTATGCCCCTCCTTAGATTTGGA
ACAAAACACCCTGGGAGGAGTACGAAGN

Query= MSMg01no536_n22.b1 MSMg01no536_n22.b1 CHROMAT_FILE:
MSMg01no536_n22.b1 PHD_FILE: MSMg01no536_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:06 2005
         (614 letters)



>mm_chr17_82969356_82970371
          Length = 1016

 Score = 1048 bits (542), Expect = 0.0
 Identities = 592/610 (97%), Gaps = 4/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccattttctctgttattaaaaacaacccagacctcgatttgttaaaccctccagc 66
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 644 gaattccattttctctgttattaaaaacaactcagacctcgatttgataaaccctccagc 585

                                                                       
Query: 67  tagattccacatttccccagcctctggaagtctgattagaagctggaatgtgctttgggg 126
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 584 tagattccaaatttccccagcctctggaagtctgattagaaactggaatgtgctttgggg 525

                                                                       
Query: 127 aaatgagtgtgtaccttcaaattccatttgctgttttctctcgcgtggagaacagatgtg 186
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 524 aaatgagtgtataccttcaaattccatttgctgttttctctcgcatggagaacagatgtg 465

                                                                       
Query: 187 agagttttcaatgaactcctatattaatatccttttctcatggtaggagccatgtcagcc 246
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 464 agagttttcaatgaactcctatattgatatccttttctcatggtaggagccatgtcagcc 405

                                                                       
Query: 247 accattcctgagttctccagtggataactccatgataactgcatggagagaggcttacag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 accattcctgagttctccagtggataactccatgataactgcatggagagaggcttacag 345

                                                                       
Query: 307 agttgttttatatgtctcattagcagagcacatagtcaggtttttaatcacttctctgtg 366
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agttgttttatatgtgtcattagcagagcacatagtcaggtttttaatcacttctctgtg 285

                                                                       
Query: 367 tcatattttcttaccactataatgttcacagagctagatttttt--ccaccttgaaatag 424
           ||| ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||
Sbjct: 284 tcacattttcttaccactacaatgttcacagagctagattttttttccaccttgaaatag 225

                                                                       
Query: 425 cttatttcttgtttttttttcaataatttattttttaaatttactttagacccttatcat 484
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cttatttcttgttttttt--caataatttattttttaaatttactttagacccttatcat 167

                                                                       
Query: 485 agcccccttcttctcccagtacactttagaaatccctctccccattatatcatccctgtt 544
           ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 166 agcccccttctcctcccagtacactttagaaatccctctccccattacatcatccccgtt 107

                                                                       
Query: 545 tcctctttgtgtgtcaccccactctggaatatctagtcccatcaggactaggcacatcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 106 tcctctttgtgtgtcaccccactctggaatatctagtcccatcaggactgggcacatcct 47

                     
Query: 605 ctcccactaa 614
           ||||||||||
Sbjct: 46  ctcccactaa 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1016
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1006
Effective search space:   607624
Effective search space used:   607624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)