Query= MSMg01no537_g04.b1 MSMg01no537_g04.b1 CHROMAT_FILE:
MSMg01no537_g04.b1 PHD_FILE: MSMg01no537_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:44 2005
(628 letters)
>mm_chr17_76647432_76648459
Length = 1028
Score = 1104 bits (571), Expect = 0.0
Identities = 610/623 (97%), Gaps = 4/623 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcttttctcttaa-ctaatccagaaaatgatactgacagttgcatccagaaa 63
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttttct-ttagtctaatccagaaaatgatactgacagttgcatccagaaa 263
Query: 64 aaagttacaagaattttgttgaattcctttggatatcattttttaaaatgaaaatatttc 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aa-gttacaagaattttgttgaattcctttggatatcattttttaaaatgaaaatatttc 322
Query: 124 cactttaatggacaaagtgggctaggaaggaatgggctagtttgtgaagagtcagaggat 183
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 cactctaatggacaaagtgggctaggaaggaatgggctagtttgtgaaaagtcagaggat 382
Query: 184 ttagtatgtgacttatagagtcgatgagttttaatccagtgaagtagaaaccaatggtag 243
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ttagtatgtgacttatagagtcaatgagttttaatccactgaagtagaaaccaatggtag 442
Query: 244 gagttatatattaattctttacaaacagaaaaaggagggcaattgtttgatcgaagcata 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagttatatattcattctttacaaacagaaaaaggagggcaattgtttgatcgaagcata 502
Query: 304 ggaaaacattatattataaccctgctttcttcatttgagaacttttaaatgcacagtatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggaaaacattatattataaccctgctttcttcatttgagaacttttaaatgcacagtatt 562
Query: 364 caaatagaagtccaaatgatgtttgggactgtgagaaaattcaccctgtatgtttgtcac 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaatagaactccaaatgatgtttgggactgtgagaaaattcaccctgtatgtttgtcac 622
Query: 424 ccttggcctcacacttctcactatctttttggtgtttgtattaccctactttgggccaaa 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttggcctcacacttctcactatctttttggtgtttgtattaccctactttgggccaaa 682
Query: 484 aattggagcaaatagagagatgatcatttctttaatatatcagctcaagcaagaattaat 543
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aattggagcaaatggagagatgatcatttctttaatatatcagctcaagcaagaattaat 742
Query: 544 atcaaatacaaattctctaaataaaattgcatccattacactggta-ttttgtgctaaga 602
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 743 atcaaatacaaattctctaaataaaattgcatccattacactggtagttttgtgctaaga 802
Query: 603 agaatattttttgaaatgtaaca 625
|||||||||||||||||||||||
Sbjct: 803 agaatattttttgaaatgtaaca 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_g04.g1 MSMg01no537_g04.g1 CHROMAT_FILE:
MSMg01no537_g04.g1 PHD_FILE: MSMg01no537_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:44 2005
(642 letters)
>mm_chr17_76776581_76777620
Length = 1040
Score = 992 bits (513), Expect = 0.0
Identities = 603/671 (89%), Gaps = 61/671 (9%)
Strand = Plus / Minus
Query: 1 caggacagccccagggctatacagagaaaccctgtctcgaaacg---cccccccccacca 57
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 749 caggacagccccagggctatacagagaaaccctgtctcgaaacgccccccccccccacca 690
Query: 58 aaaaaagagagagacagagagacagacagagacagagacagaaagtcaaacagagacaca 117
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 689 aaataagagagagacagagagacagacagagacagagacagacagtcagacagagacaca 630
Query: 118 cacatacacacacagagaaatggagacagagaaacacagagacagagagagacagagaca 177
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cacatacacacacagagaaatggagacagagaaacacagagacagag------------- 583
Query: 178 gagacagagacagagacagagacagagacagagaagcatattactacatgtcttttatcc 237
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 -----------------agagacagagacagagaagcatattactacatgtcttttatcc 540
Query: 238 tagaactcacaggtggaggtacaaagatcatgaattcaataatagttttgttaacataga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tagaactcacaggtggaggtacaaagatcatgaattcaataatagttttgttaacataga 480
Query: 298 gagtttgagactaggtctattgtcataaggtcttatcacaaaaaaaacatactta----- 352
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 479 gagtttgagactaggtctattgtcataaggtcttatcac--aaaaaacatacttatgtgt 422
Query: 353 ---------------------tgtgtgtgtgtgtgtattcttttcatctagaaatccttt 391
|||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcttttcatctagaaatccttt 362
Query: 392 atttttaatttaaatgtagttttaaaatatagtctagagttagattttgaaaattaaacc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atttttaatttaaatgtagttttaaaatatagtctagagttagattttgaaaattaaacc 302
Query: 452 actgatctgaaaaataatgtaaactgcttaaaatatttgtattagcagtcacatgatgct 511
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 301 actgatctgaaaaataatgtaaactgcttaaaatatttgtattagcaggcacatgatgct 242
Query: 512 aacctggaatgatcttagtagagattgttttacttcctgattcagcacatgatatttctt 571
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 aacctggaatgatcttactagagattgttttacttcctgattcagcacatgaaatttctt 182
Query: 572 ttttcattttataacatagttgtaatagaaaatgtgcaaaagaaggtaggaaattggaaa 631
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 ttttcattttataacatagttgtaatagaaaatgtgccaaagaaggtaggaaattggaaa 122
Query: 632 aatatggtcaa 642
|||||||||||
Sbjct: 121 aatatggtcaa 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1040
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1030
Effective search space: 650960
Effective search space used: 650960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
