Query= MSMg01no538_f01.b1 MSMg01no538_f01.b1 CHROMAT_FILE:
MSMg01no538_f01.b1 PHD_FILE: MSMg01no538_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:56 2005
(659 letters)
>mm_chr17_20649892_20650946
Length = 1055
Score = 988 bits (511), Expect = 0.0
Identities = 559/577 (96%), Gaps = 4/577 (0%)
Strand = Plus / Minus
Query: 83 aattttaaaaggcacttataataagataatactaaaagagagcacgtggatcgatacact 142
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1055 aattttaaaaggcacttataataagataatactaaaagagagcacgtggatcaatacact 996
Query: 143 agactaactcggggatagggtgtgagtatacaggttaatgagaactccaaagctccagga 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 agactaattcggggatagggtgtgagtatacaggttaatgagaactccaaagctccagga 936
Query: 203 gttgagttccttttgaaactctatgcctcgtgagtgtacccaggcttctcagcctgtcaa 262
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 935 gttgagttccttttgaaactctatgcctcatgagtgtacccaggcttctcagcctgtcaa 876
Query: 263 gcagacttcactggagtgtgcatgacatgatttcaggtgtttccaatcacatgggaggtc 322
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 875 ggagacttcactggagtgtgcatgacatgatttcaggtgtttccaatcacatgggagctc 816
Query: 323 ttctatcaggttgatttccactaacttttattggtaactctatactaacaggtattccac 382
||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 815 gtctattgggttgatttctactaactattattggtaactctatactaacaggtattccac 756
Query: 383 agatatgtcatggcagattcttctacaggaactcccttagcatgtatccacgcacctcac 442
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 755 agatacgtcatggcagattcttctacaggaactcccttagcatgtatccatgcacctcac 696
Query: 443 caagccttgtactctagggtagtggatttgaaaaagcacccaggtattcagtatttacaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 caagccttgtactctagggtagtggatttgaaaaagcacccaggtattcagtatttacaa 636
Query: 503 ttatttttggaatttttttctttatattctctcagtttttctttgcttgatttaattaat 562
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 635 ttatttttggattttttttctttatattctctcagtttttctttgcttgat----ttaat 580
Query: 563 gatctgaaaaagcacacaaacctaataaagtacaataaagcttcactataatgttttaag 622
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gatctaaaaaagcacacaaacctaataaagtacaataaagcttcactataatgttttaag 520
Query: 623 aacacgataataaatttgtagcatgcatggcattaat 659
|||||||||||||||||||||||||||||||||||||
Sbjct: 519 aacacgataataaatttgtagcatgcatggcattaat 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1055
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1045
Effective search space: 678205
Effective search space used: 678205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_f01.g1 MSMg01no538_f01.g1 CHROMAT_FILE:
MSMg01no538_f01.g1 PHD_FILE: MSMg01no538_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:56 2005
(445 letters)
>mm_chr17_20484514_20485358
Length = 845
Score = 799 bits (413), Expect = 0.0
Identities = 437/445 (98%), Gaps = 1/445 (0%)
Strand = Plus / Plus
Query: 1 aattctaggcaattttgtttttagtagcctttattattttactggagctatgcaccattg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aattctaggcaattttgtttttagtagactttattattttactggagctatgcaccattg 260
Query: 61 tgagcaattttacatattaaaagaaaagccaattttctagaacatttctcatttagataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcaattttacatattaaaagaaaagccaattttctagaacatttctcatttagataa 320
Query: 121 tgccattctagattatttttttcttcttttattagatgttttctttatttacatttcaaa 180
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccattctagattaattttt-cttcttttattagatgttttctttatttacatttcaaa 379
Query: 181 tattatcccctttccttgcttcccctctgaaaagcctcctttcccctccccgtacccctc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 tattatcccctttccttgcttcccctctgaaaagcctccttttccctccccgtacccctc 439
Query: 241 ccccctcacctttttaccatgtttttcctcatgtatattagcaatgagtatggctccact 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acccctcacctttttaccatgtttttcctcatgtatattagcaatgagtatggctccact 499
Query: 301 cctattgactttatatttgatctcactctctctttgaatttcagcaatgcagattttcat 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctattggctttatatttgatctcactctctctttgaatttcagcaatgcagattttcat 559
Query: 361 tacaaaacattgatagtaccttgaaggcaaacaaaattatttcatggctttattattatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacaaaacattgatagtaccttgaaggcaaacaaaattatttcatggctttattattatt 619
Query: 421 tgtattaactaccaaattcttcctt 445
|||||||| ||| ||||||||||||
Sbjct: 620 tgtattaagtacaaaattcttcctt 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
