BAC Information

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BAC

Clone NameMSMg01-538H18
Chromosome17 (Build37)
Map Location 46,396,031 - 46,568,449
singlet/doubletdoublet
Overlap geneTjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3
Upstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88
Downstream geneSlc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538H18.T7 (MSMg01no538_h18.b1)MSMg01-538H18.TJ (MSMg01no538_h18.g1)
ACCAG605201AG605202
length744749
length of high quality
(start - end)		650 (54 - 703)619 (63 - 681)
definitionCHROMAT_FILE: MSMg01no538_h18.b1 PHD_FILE: MSMg01no538_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:09 2005CHROMAT_FILE: MSMg01no538_h18.g1 PHD_FILE: MSMg01no538_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,567,800 - 46,568,449)(46,396,031 - 46,396,649)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAGTA
TTCAAAAGACCTCGGAGGAGATGGTGGGAAGCCTGAGTTAGGTTAATCAC
TCCTGCGAATGGCTCATTTGGATCTTATGTCCACTGGGTCATAGATGTAG
CAGCCCACATCGCCAATGTTCACACCTGAAGGAGAGAGCCCTGTCACCAA
GGGCTTTGTTGGCAAGGGAGTGGAGGTCTGAAGGGATAGGGGAGGGGTCT
AGATGTCTGACCACAAGGGAGGTTGTCCACACATTCTCATAGGTCCAGTG
TCTGGGGTCAGATTGCCCACCTTTGGGGCCAAACAGGTATCCATAGCAGG
GGATGTGGCAGTAAGGCATGCCATCATGCTGGAACACAGAAGAAGAATCT
TCTCAGCTTCTCTTCCCACTTCTCGACTCCTCTCTCCCACCCACCATAGC
CTTCTCCCTGCCCTGCTCACCTCCGCATGACTCCCAGCAGTCAGGGTCTT
CCTGCAACGTTGGCACCTCAGGCAGGGTCGGTGCCAATTTCTGCCCAAAG
ACATCACTTTCTCAGCTGTTGGTGGAGACCAGTGGTAGCTCTTCCATTCT
AGGGGCAGGGCAGGGCAGGGACAACTCCCTGCCTTGAATCACCTCCCTAC
CCTCTGCCGCCTCAACAGTGCTCCTCACCAAGCTTTCTGCTGCCACTTAC
CAAAAAAGACAGGATCCCCACATCCAGGGCACAGTGAAGTCTCA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATCACCTTCCTACCAGGGTATAATGGGTGTGGTGGAG
ACGGGGTAGGGTAGGGACTCAACTTGTCGAAGGCTGGCAGGGGCAGCTCC
TCCTCCGGGGAGCCCCCTGCAGTACTCACTGAGCAACACTCCCCATTGGG
GCTGCCCGGGGCAGGGGGGCTGGCTGGGTCACCCCCACTCATGTCCACAT
GCACGAATACATCCTCAGCCAAGGGGCGCCCAGCACTGCCAGACTGAGCT
GAATTGAGCAAGAGAGACTCAGGTTTCTCCAACACCCGGGCAATGACTGA
GGTAGGCACCACAGCCCCTGGGGCCAGGCTGGAAGAAGGGCTGGGGCTGG
GGCTGGCAACCTCCTGCCCACTGCGCAGATGTTTCCGAACCATGTCCTGG
AGCTCACAGGGTAGCTAAGAGAAGAGAAGGGAGAGAGACATGAAGGGGCC
TCACTAAGGATAGCTTGACCCACAGCAAAAGCGCTGGCTGGGCACCATTT
CCTAGTCAACCCTGTACACTCAGCTTATAAGCACCTACGCAACCTCACCT
CAGAGAGAAAAGCAAAGGTAGGGATAAAACAGCATGGAGCTAACCAGCTC
CACACCAGCCCTGGAGACAGAGGCTCTACCCTGAGAGGACTTGAGGGCAG
GTGGGTTTAACTCAAGGCCGACGAGAGCTCTGTCCGCCACCCCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_h18.b1 MSMg01no538_h18.b1 CHROMAT_FILE:
MSMg01no538_h18.b1 PHD_FILE: MSMg01no538_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:09 2005
         (650 letters)



>mm_chr17_46567600_46568649
          Length = 1050

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagacctcggaggagatggtgggaagcctgagttaggttaatcactcctgcgaatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 aaaagacctcggaggagatggtgggaagcctgagttaggttaatcactcctgcgaatggc 791

                                                                       
Query: 61  tcatttggatcttatgtccactgggtcatagatgtagcagcccacatcgccaatgttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tcatttggatcttatgtccactgggtcatagatgtagcagcccacatcgccaatgttcac 731

                                                                       
Query: 121 acctgaaggagagagccctgtcaccaagggctttgttggcaagggagtggaggtctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acctgaaggagagagccctgtcaccaagggctttgttggcaagggagtggaggtctgaag 671

                                                                       
Query: 181 ggataggggaggggtctagatgtctgaccacaagggaggttgtccacacattctcatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggataggggaggggtctagatgtctgaccacaagggaggttgtccacacattctcatagg 611

                                                                       
Query: 241 tccagtgtctggggtcagattgcccacctttggggccaaacaggtatccatagcagggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tccagtgtctggggtcagattgcccacctttggggccaaacaggtatccatagcagggga 551

                                                                       
Query: 301 tgtggcagtaaggcatgccatcatgctggaacacagaagaagaatcttctcagcttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgtggcagtaaggcatgccatcatgctggaacacagaagaagaatcttctcagcttctct 491

                                                                       
Query: 361 tcccacttctcgactcctctctcccacccaccatagccttctccctgccctgctcacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tcccacttctcgactcctctctcccacccaccatagccttctccctgccctgctcacctc 431

                                                                       
Query: 421 cgcatgactcccagcagtcagggtcttcctgcaacgttggcacctcaggcagggtcggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cgcatgactcccagcagtcagggtcttcctgcaacgttggcacctcaggcagggtcggtg 371

                                                                       
Query: 481 ccaatttctgcccaaagacatcactttctcagctgttggtggagaccagtggtagctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccaatttctgcccaaagacatcactttctcagctgttggtggagaccagtggtagctctt 311

                                                                       
Query: 541 ccattctaggggcagggcagggcagggacaactccctgccttgaatcacctccctaccct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccattctaggggcagggcagggcagggacaactccctgccttgaatcacctccctaccct 251

                                                             
Query: 601 ctgccgcctcaacagtgctcctcaccaagctttctgctgccacttaccaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgccgcctcaacagtgctcctcaccaagctttctgctgccacttaccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_h18.g1 MSMg01no538_h18.g1 CHROMAT_FILE:
MSMg01no538_h18.g1 PHD_FILE: MSMg01no538_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:09 2005
         (619 letters)



>mm_chr17_46395831_46396849
          Length = 1019

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcaccttcctaccagggtataatgggtgtggtggagacggggtagggtagggactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcaccttcctaccagggtataatgggtgtggtggagacggggtagggtagggactcaa 260

                                                                       
Query: 61  cttgtcgaaggctggcaggggcagctcctcctccggggagccccctgcagtactcactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtcgaaggctggcaggggcagctcctcctccggggagccccctgcagtactcactga 320

                                                                       
Query: 121 gcaacactccccattggggctgcccggggcaggggggctggctgggtcacccccactcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaacactccccattggggctgcccggggcaggggggctggctgggtcacccccactcat 380

                                                                       
Query: 181 gtccacatgcacgaatacatcctcagccaaggggcgcccagcactgccagactgagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccacatgcacgaatacatcctcagccaaggggcgcccagcactgccagactgagctga 440

                                                                       
Query: 241 attgagcaagagagactcaggtttctccaacacccgggcaatgactgaggtaggcaccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgagcaagagagactcaggtttctccaacacccgggcaatgactgaggtaggcaccac 500

                                                                       
Query: 301 agcccctggggccaggctggaagaagggctggggctggggctggcaacctcctgcccact 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcccctggggacaggctggaagaagggctggggctggggctggcaacctcctgcccact 560

                                                                       
Query: 361 gcgcagatgtttccgaaccatgtcctggagctcacagggtagctaagagaagagaaggga 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgcagatgttttcgaaccatgtcctggagctcacagggtagctaagagaagagaaggga 620

                                                                       
Query: 421 gagagacatgaaggggcctcactaaggatagcttgacccacagcaaaagcgctggctggg 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 gagagacatgaaggggcctcactaaggatagcctgacccacagcaaaagcgctggctggg 680

                                                                       
Query: 481 caccatttcctagtcaaccctgtacactcagcttataagcacctacgcaacctcacctca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccatttcctagtcaaccctgtacactcagcttataagcacctacgcaacctcacctca 740

                                                                       
Query: 541 gagagaaaagcaaaggtagggataaaacagcatggagctaaccagctccacaccagccct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagagaaaagcaaaggtagggataaaacagcatggagctaaccagctccacaccagccct 800

                              
Query: 601 ggagacagaggctctaccc 619
           |||||||||||||||||||
Sbjct: 801 ggagacagaggctctaccc 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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