NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGATTCATACCGAATGGCAGAGAAGCACTTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTCGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAAC
CTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCCA
GAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGA
CAAAACACCATGGTAAGAGTTACN

NCAATGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAGTTGCCTCTCAGATGCCAAGA
TAGCTTTATTAAAAGTGAACTTTAAAACGTGTATTTAGCACGCGTCTGTC
ACCTGCTATGCTAGTTTCTGTTGAGGGTTCCTTCTGGTGTCCTTGATGCT
CAGTGCAGTGGTGGGCATAGAGTGGATCTCATAGAAACCTTGGGATCTAC
CGAACCCAAGGAGCTCAACCATACCTTCACTTGTGAAAGTTAACGTGCTA
AACGTCTGGGAGAGACTGCTATTTTAGTTCTGTTAAGATTGAATGACAGA
CAGCCATTCACCACCACCATGTCCGCCACCGCCCCAGCTGAGAACTCAAC
CAAGCTCTTCTCTTTCCTTTAGACTGTGAAAGGAGGCATTTCGGAGACGA
GGATTGAGAAGCGAATAGTCATCACAGGGGACGCTGACATTGACCATGAC
CAGGTAGTATGCGTGAGGATGGTAACCACTCTGTCCGAAGAGTAAATGTG
ACCGCGCTGGCCTTTCAGTTCCCAGTGCTAATCTTCCTGGTCCAGCACGT
ATTCTGCAATACGTTTCCGAGATAACTTTCAGCATATGCCTTTGAATCCT
CCCATAATCGTTGTGCCTCGGNGTTAACTGTGGGGGTAGATTTAGCTCGT
AAGTCTACATCTTGCTACTGCTCATGCATGTCCCACCTCTTTTTTGTTTC
CGCCCTCTGTGATTTCCCGGGGATAGCGCTGGCTCATGC

Query= MSMg01no539_k23.g1 MSMg01no539_k23.g1 CHROMAT_FILE:
MSMg01no539_k23.g1 PHD_FILE: MSMg01no539_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
         (487 letters)



>mm_chr17_69636046_69636936
          Length = 891

 Score =  857 bits (443), Expect = 0.0
 Identities = 479/493 (97%), Gaps = 8/493 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagttgcctctcagatgccaagatagctttattaaaagtgaactttaaaacgtgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 attagttgcctctcagatgccaagatagctttattaaaagtgaacttcaaaacgtgtatt 260

                                                                       
Query: 61  tagcacgcgtctgtcacctgctatgctagtttctgttgagggttccttctggtgtccttg 120
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcatgcgcctgtcacctgctatgctagtttctgttgagggttccttctggtgtccttg 320

                                                                       
Query: 121 atgctcagtgcagtggtgggcatagagtggatctcatagaaaccttgggatctaccgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctcagtgcagtggtgggcatagagtggatctcatagaaaccttgggatctaccgaac 380

                                                                       
Query: 181 ccaaggagctcaaccataccttcacttgtgaaagttaacgtgctaaacgtctggga-gag 239
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 381 ccaaggagctcaaccataccttcacttgtgaa-gttaacgtgctaaacgtctgggatg-g 438

                                                                       
Query: 240 actgctattttagttctgttaagattgaatgacagacagcca---ttc--accaccacca 294
           |||||||||||||||||||||||||||||||||| ||||| |   |||  ||||||||||
Sbjct: 439 actgctattttagttctgttaagattgaatgacaaacagctaggcttctcaccaccacca 498

                                                                       
Query: 295 tgtccgccaccgccccagctgagaactcaaccaagctcttctctttcctttagactgtga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtccgccaccgccccagctgagaactcaaccaagctcttctctttcctttagactgtga 558

                                                                       
Query: 355 aaggaggcatttcggagacgaggattgagaagcgaatagtcatcacaggggacgctgaca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggaggcatttcggagacgaggattgagaagcgaatagtcatcacaggggacgctgaca 618

                                                                       
Query: 415 ttgaccatgaccaggtagtatgcgtgaggatggtaaccactctgtccgaagagtaaatgt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 619 ttgaccatgaccaggtagtatgcgtgaggatggtaaccactctgtccgaggagtaaatgt 678

                        
Query: 475 gaccgcgctggcc 487
           |||||||||||||
Sbjct: 679 gaccgcgctggcc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 891
Length adjustment: 10
Effective length of query: 477
Effective length of database: 881
Effective search space:   420237
Effective search space used:   420237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)