Query= MSMg01no540_l23.b1 MSMg01no540_l23.b1 CHROMAT_FILE:
MSMg01no540_l23.b1 PHD_FILE: MSMg01no540_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:08 2005
(657 letters)
>mm_chr17_36355915_36356973
Length = 1059
Score = 215 bits (111), Expect = 1e-59
Identities = 232/287 (80%), Gaps = 36/287 (12%)
Strand = Plus / Plus
Query: 98 gggtggtgactagggagagcttccagttcg----tcc-gatcccagtttgacattaaggg 152
|||||| ||||||||||||||| || | ||| |||||||||||||||||||||
Sbjct: 288 gggtggggactagggagagctt----ttggattatccaaatcccagtttgacattaaggg 343
Query: 153 ttaagcaag-----ggagc---a----tatgaagtagactgggcttttcctgggacacct 200
||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct: 344 ttaagcaagccctt---gcttaacccttatgaagtagactgggcttttcctaggacacct 400
Query: 201 gt-tgtcaaggcctttaactcattcccttagacactccattgggaatccaagacccttaa 259
|| | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtct-tccaggcctttaactcatccccttagacactccattgggaatccaagacccttaa 459
Query: 260 c---tcattctcatagat-tctcatccagatctcaaggtgataaaggaacaaaagcagga 315
| || ||||||||| | | |||| | |||||||||||||| |||||||||||||
Sbjct: 460 cgagtc---ctcatagatatttggtccaaagctcaaggtgataaaagaacaaaagcaggt 516
Query: 316 cagctgttgc--agttaatgatggcttgacaggcaactgactctatt 360
|||||| || ||||||| | ||| || ||||| ||||||||||||
Sbjct: 517 cagctgg-gcgtagttaataagggcctggcaggccactgactctatt 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1059
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1049
Effective search space: 678703
Effective search space used: 678703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_l23.g1 MSMg01no540_l23.g1 CHROMAT_FILE:
MSMg01no540_l23.g1 PHD_FILE: MSMg01no540_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:08 2005
(568 letters)
>mm_chr17_36865401_36866370
Length = 970
Score = 895 bits (463), Expect = 0.0
Identities = 544/575 (94%), Gaps = 12/575 (2%)
Strand = Plus / Plus
Query: 1 agtttgtggaattccacagaaacaggactgagccactgaggtccttcatgaataaggagg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgtggaattccacagaaacgggactgagccactgaggtccttcatgaataaggagg 260
Query: 61 ggcata-tattgggtggggaaagactcagagtgtcctgaaagtcacaaggtgttccaaag 119
|||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggcatagtattgg-tggggaaagactcagagtgtcctgaaagtcacaaggggttccaaag 319
Query: 120 aaaaactgagaaaatttctcagcttctatac--cctaaagctcttcaggtgagtgatctg 177
|||||| ||||||| |||||||||||| || | |||||||| || | ||||| ||||
Sbjct: 320 aaaaac--agaaaatctctcagcttctaaacagc--aaagctctacaagagagtggtctg 375
Query: 178 agttcagaagtcaggacccctccatcttcccacagacagaccaaagtcacccatttccac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agttcagaagtcaggacccctccatcttcccacagacagaccaaagtcacccatttccac 435
Query: 238 tacttaagggtaaggctccatcaaattgacccata----cactggaacctggagggactt 293
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 436 tacttaaaggtaaggctccatcaaattgacccatagatacactggaacctggagggactt 495
Query: 294 gagacctcactgggttttagctgcagttaagggttgaaaaggcttaatagtgtggaggca 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 496 gagacctcactgggttttagctgcagttaagggttgaaaaggcttaatggtgtggaggca 555
Query: 354 agtatgactttgtgtgtgtggcactggcaggcagcaattctgacctcaatggcaggacta 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 556 agtatgactttgtgtgtgtggcactggcaggcagcaattctgacctcaatggcaggacaa 615
Query: 414 ggatatcatactctgaagaatgtgcatggccgtgaattgcccacaaaagggttttttcct 473
||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 616 ggatatcatactctgaagaatgtgcatggccatgaattgcccacaaaaggatgctttcct 675
Query: 474 taaggtgctatgagtgtgactgccctagtcacagagagctcaccctgaagaagagcataa 533
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 taaggtgctatgagtgtgcctgccctagtcacagagagctcaccctgaaggagagcataa 735
Query: 534 gctcctacactgaagaaagcaacactgctcagatg 568
||||||||| |||||||||||| ||||||||||||
Sbjct: 736 gctcctacagtgaagaaagcaagactgctcagatg 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 970
Length adjustment: 10
Effective length of query: 558
Effective length of database: 960
Effective search space: 535680
Effective search space used: 535680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
