CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGA
ATTCATTCTTGGAATGCTATTGCCTTGGAGAGTGGGGGCTAGTATCTATC
CAAAAGGTGCAAAATCAGTTGGTACCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTAGAGA
TAGGGTCTTTTGTAGTCTAGGCAGGCTCCCCACCCACTGCGTAGCACTTT
CTGTCCTTTGCTTCTTCCTCTCAAATGCCAGGATTAAAGGCCTGTGCCAC
ATATCTTGGTTCTTGGAATCTAGCCACTGGCTTTGTGTGTACTACCCAAA
CATTGTGTCAATTGAACTGCACCTCTAGGCCAAGCTCAATTAATTTTTAA
ACTACTGTAAATATAATTTATTCATTTAGTTTTGGTGTTGGGGATTGAAC
CCAGGAATTTATACATGATGTCCTCTGAGCTGCACCCCCATTTCTTTTTT
TTTTTTGTTGTTTTTTTTTTTTTTTTGAGACAGAGTTTCTCTGTGTAGTC
CTGGCTGTCCTGGAACTCACTCTGTAGTACAGGCTGACCTTGAACTCAGA
AATCCACCTGCCTCTGCCTCTGCATCCCAAGTGCTGGGATTAAAGGCATG
TGCCATCACTGCCTAGCACACCCCCAGTTCCTTGAATGTGCAATTTTTGC
CCTCCTCTCTAGGAAGCTCAGAGCCCATTGAATAATTTCAGTGGCGACTT
CTTGAGCATTTAA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAT
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGATTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAGAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAA
CACATGAAACTCAAGAAGAATGAAGACTGGAGTGTGGACACTATGCCCCT
CCTTAGATTTGGGAACAAAA

Query= MSMg01no540_n20.b1 MSMg01no540_n20.b1 CHROMAT_FILE:
MSMg01no540_n20.b1 PHD_FILE: MSMg01no540_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:17 2005
         (599 letters)



>mm_chr17_53560066_53561064
          Length = 999

 Score =  982 bits (508), Expect = 0.0
 Identities = 564/602 (93%), Gaps = 32/602 (5%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcattcttggaatgctattgccttggagagtgggggctagtatctatccaaaaggt 73
           |||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 834 gaattcattcatagaatgctattgccttggagagtgggggctagtatctatctaaaaggt 775

                                                                       
Query: 74  gcaaaatcagttggtacctatctatctatctatctatctatctatctatctatctatcta 133
           |||||||||||||||||                |||||||||||||||||||||||||||
Sbjct: 774 gcaaaatcagttggtac----------------ctatctatctatctatctatctatcta 731

                                                                       
Query: 134 tctatctatctatctatctatctatttagagatagggtcttttgtagtctaggcaggctc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tctatctatctatctatctatctatttagagatagggtcttttgtagtctaggcaggctc 671

                                                                       
Query: 194 cccacccactgcgtagcactttctgtcctttgcttcttcctctcaaatgccaggattaaa 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cccacccactgcgtagcactttctgtcctttgcttcttcctctcaaatgccaggattaaa 611

                                                                       
Query: 254 ggcctgtgccacatatcttggttcttggaatctagccactggctttgtgtgtactaccca 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggcctgtgccacatatcttggttcttggaatctagccactggctttgtgtgtactaccca 551

                                                                       
Query: 314 aacattgtgtcaattgaactgcacctctaggccaagctcaattaatttttaaactactgt 373
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aacatcgtgtcaattgaactgcacctctaggccaagctcaattaatttttaaactactgt 491

                                                                       
Query: 374 aaatataatttattcatttagttttggtgttggggattgaacccaggaatttatacatga 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaatataatttattcatttagttttggtgttggggattgaacccaggaatttatacatga 431

                                                                       
Query: 434 tgtcctctgagctgcacccccatttcttt-----tttttttttgttgtt----------- 477
           |||||||||||||||||||||||||||||     |||||||||||||||           
Sbjct: 430 tgtcctctgagctgcacccccatttctttctttctttttttttgttgttgttgttttttt 371

                                                                       
Query: 478 ttttttttttttttgagacagagtttctctgtgtagtcctggctgtcctggaactcactc 537
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttttttttttttttgagacagggtttctctgtgtagtcctggctgtcctggaactcactc 311

                                                                       
Query: 538 tgtagtacaggctgaccttgaactcagaaatccacctgcctctgcctctgcatcccaagt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 310 tgtagtacaggctgaccttgaactcagaaatccacctgcctctgcctctgcctcccaagt 251

             
Query: 598 gc 599
           ||
Sbjct: 250 gc 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)