GGAGCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTTTACCTCTGATTTCCTGTTTTTAATTAGGTTATTTGTTT
TGTTGGTTTGTACTTTCTTGAACACAGTATTCATCTTCTATTATTCCTTT
GTCAGCTTAGTGAACATATTTTCCAAATGTGCAGGCATTTGTTTGTTCCT
ATTGTTGGTATCATTTGCTTTAAAGTAACTTTTCATTTGTATAATATTTC
ATTAGATAATTATTGGTCAGAGAGCCTGAAGCATTGGTATTCTGTTCAAG
AAATTATCTCCTGTATTAATTCCTAAAGCGTATTCCCTATCTTCTCTTCC
ATTATATTTAGTGTACTGGCTTTATTTTGAGGTCTTTAATCTACTTGGAC
TAAACTTTTTGGTGGAGTAATAAACATGGATCTATTTTCAATCTTCTACA
TGTAGACATCTAGTTAGAGTAGCACCATTTATTGAATATGCTTTCTTTTT
TCCATTGTATGGATTGTCGCTGCAAAAATCAAAGGTGCATAGATGAGGGG
TGTGGGTTCATTTATTGGTCTTAATTCAATTCCATTGTTCAATCTGTCTG
TTTCTGTACCAATACTTCAAAATTTTACATAATGCTCTGAAGTATATCCT
GAGGTGACAAATGATGGTAACTCCAGAAGTTTTTTCATTGTACAGGAAAA
AAAAGAAAAAAAAACTATCCTGGGTTTTTGTTTTTCTCACTGACA

NNCCTACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAATTTCTCTCCATTTA
AATTGATATTATCTATGTAATTGCTGTAAACTACACATTGAAAATAAGCC
TCACTCCTCAAATTGAGATTGGATGTATTTATTCTGTATCCATTTTTTAG
ACATTCAAATAAAATTGAGCAGTAAGAATCTAGTGATTTTTTAACCCATA
GTGCTGTGATACAACAGCATTTATCAGAGTGTTACATTGGCCACATAAAA
TGTAGGTAGACTGCAATGTGGTAGCATTATTTTCTTCCCATGCTTTATTT
TTAACAAATAAAGAAATCACCACTGTTCTTGTCTAACTGAGATCACTGCC
TTATTCTCTTTCTGGGCCTCAGTCACTACTGACTTTATTGTAAACCTTTG
TTTACTTTTCATTGTAAATATGGTTTCTTCCAGTTTCTGATCAGACTGCT
TATGCCATCTGTTCCTATTGAAATCTTGCCAAGTTTAAAACGGAGTATTA
CTTCAGAGGTATCCCCACTCTCTATGAAATGGAAACCTACATTGATATCA
AGAGTGTTTGAGCAGGGCAGTGGTGGTGCACACCTTTATACTAGCACTTG
GGAGGCAGAGGCAGGCAGATATCTGAGTTCAAGGTCTGCCTAGCATAAAG
AGTGACCTAAATGCCTTAGAG

Query= MSMg01no540_o09.g1 MSMg01no540_o09.g1 CHROMAT_FILE:
MSMg01no540_o09.g1 PHD_FILE: MSMg01no540_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:20 2005
         (642 letters)



>mm_chr17_39107928_39108969
          Length = 1042

 Score = 1147 bits (593), Expect = 0.0
 Identities = 629/641 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaaatttctctccatttaaattgatattatctatgtaattgctgtaaactacacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atttaaatttctctccatttaaattgatattatctatgtaattgctgtaaactacacatt 727

                                                                       
Query: 61  gaaaataagcctcactcctcaaattgagattggatgtatttattctgtatccatttttta 120
           ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 726 gaaaataagactcacttctcaaattgagattggatgtatttattccgtatccatttttta 667

                                                                       
Query: 121 gacattcaaataaaattgagcagtaagaatctagtgattttttaacccatagtgctgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gacattcaaataaaattgagcagtaagaatctagtgattttttaacccatagtgctgtga 607

                                                                       
Query: 181 tacaacagcatttatcagagtgttacattggccacataaaatgtaggtagactgcaatgt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 606 tacaacagcatttatcagagtgttacattggccacatgaaatgtaggtagactgcaatgt 547

                                                                       
Query: 241 ggtagcattattttcttcccatgctttatttttaacaaataaagaaatcaccactgttct 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 546 ggtagcattattttcttcccatgctttatttttaacaaataaataaatcaccactgttct 487

                                                                       
Query: 301 tgtctaactgagatcactgccttattctctttctgggcctcagtcactactgactttatt 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtctaactgagatcactgccttgttctctttctgggcctcagtcactactgactttatt 427

                                                                       
Query: 361 gtaaacctttgtttacttttcattgtaaatatggtttcttccagtttctgatcagactgc 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtaaacctttgttttcttttcattgtaaatatggtttcttccagtttctgatcagactgc 367

                                                                       
Query: 421 ttatgccatctgttcctattgaaatcttgccaagtttaaaacggagtattacttcagagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 366 ttatgccatctgttcctattgaaatcttgccaagtttaaaacggagtatcacttcagagg 307

                                                                       
Query: 481 tatccccactctctatgaaatggaaacctacattgatatcaagagtgtttgagcagggca 540
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tatccacactctctgtgaaatggaaacctacattgatatcaagagtgtttgagcagggca 247

                                                                       
Query: 541 gtggtggtgcacacctttatactagcacttgggaggcagaggcaggcagatatctgagtt 600
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 gtggtggtgcacacctttatactagcacttgggaggcagaggcaggcacatatctgagtt 187

                                                    
Query: 601 caaggtctgcctagcataaagagtgacctaaatgccttaga 641
           |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 186 caaggtctgcctagtataaagagtgacctaaatgccttaga 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)