TTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACCAAGTGATTAAAAGAGTCATCAGGCCAGAGTACTCA
TGTCTCTGGAAACACCCTTGCAGGCACACCCAGAGTTGTGCTTTATAGTC
TCCTGGACAATAACGTTGATAGTTAAAACTAGCCATCACAACTTCACCAT
GTGTCATTTAAAAGCCTCCTGGATGCCAAGATTTGGGTACTACTCTATGG
AAGAAGAACAGCAAACTTGGCAAATGCTCAAAATCAGCTATAGGCAAGAC
AAGAAAAGGACTATACCTTTCATGAGCTGGAGATTTATAATAGAGATAAT
GTTTCAAGATGACAGATGGTTAAAGGCACCTCTTGATTCAGAGAAGAGAG
AGTGCTTCTCTATGTGGACACATGGCTTGCTTCCTGGGGAAAAAGTGGAG
AGATGGAAGCACTTGTGGGCCTCCTGGATGAGTGTGGTATTTGATCATCT
GCTTGGCGTCTTTCTGCCTGCATGCAGCCACCCAGTAATCAGAGGTCCTG
GGCCACATGGTTCACATGGAGACTGTTACCCATCACCTGCTCCGACACTA
CTGCTGGGAGTGTTTTCTTTCTTTAATTAAATCCCTTGGGTAAAAGGATC
TTTCCAATTTGAAAAAAACGTTTGGAATGCTCTGCAGAAGTAAGCAGATT
AAAGGGGGGGGGGGCGCCAGGCTAGCCAATTATTTGTTAAGGGAGTAGGA
ATCAGCAGTTATTCTTTT

TTTCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACCTGTTTTCCTGT
ATTTCTCTCAGTGAGTTATTGATATCCTCCTTAAAAGACTCTATTATCTT
CATGAAATAGGATTTTAGGTCAGCTTCCTGATTTTCAGGTGTGTTGTTGT
GTTTAGGACTTGCTGTGGTGAGAAACCTGGGTTCTGATGATGCCCACATG
TATTGGCTTCTGTTGCTTATGGTCTTGCACTTGCCTTTTGCCATCTGGAT
ATCCCTGGTGTTTTTTAGTATGGGTGACTATACTCTTTTGTCCCTGGGTT
GCTTCAGGTCTCCTGGTAGGCCTTCAGCCTTGGCTGTAGCAGACCACCTG
TGGGGCCTTCCAACTGGGCGCTCTTCACAGGGGCAGAGAACCTGCCGATC
TGTTGGCCTGGCTGCAGTAGATCTCCTGGGAGGCCTTCAGACTCATGGGT
TTTTAATGGAGCAGTCAAGCTGTTGTCCAACTGCTCTGAGTGCAGTGGGT
CTTCTACTGCTCTGAGTATAGCAGGTCTTTAACTGCTCTGAGTACAGGAG
GTCCTCAACTGCTCTGAGTGTAGTGGGTTTTCTAGGGTGAATCAGGTACG
GTGTCTTCACTGGAGCAGATCAGCCAAGAGTCTGCCCAGCAAAAAGGACT
CGGCAGAAGGAGCAGAAGAAACAGAAGGGGCAGAGTCTGCCCTT

Query= MSMg01no541_g07.b1 MSMg01no541_g07.b1 CHROMAT_FILE:
MSMg01no541_g07.b1 PHD_FILE: MSMg01no541_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:01 2005
         (670 letters)



>mm_chr17_53348557_53349631
          Length = 1075

 Score = 1218 bits (630), Expect = 0.0
 Identities = 662/680 (97%), Gaps = 14/680 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaagtgattaaaagagtcatcaggccagagtactcatg---------tctct 55
           |||||||||||||||||||||||||||||||||||||| |||||||         |||||
Sbjct: 196 gaattcaccaagtgattaaaagagtcatcaggccagagcactcatgatttaattgtctct 255

                                                                       
Query: 56  ggaaacacccttgcaggcacacccagagttgtgctttatagtctcctggacaataacgtt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggaaacacccttgcaggcacacccagagttgtgctttatagtctcctggacaataacgtt 315

                                                                       
Query: 116 gatagttaaaactagccatcacaacttcaccatgtgtcatttaaaagcctcctggatgcc 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatagttaaaactagccatcacaacttcaccatgtgtcatttaaaagcctcctggatgcc 375

                                                                       
Query: 176 aagatttgggtactactctatggaagaagaacagcaaacttggcaaatgctcaaaatcag 235
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 376 aagatttgggtactactctatggaaaaagaacagcaaacttggcaaatgctcaaaatcag 435

                                                                       
Query: 236 ctataggcaagacaagaaaaggactatacctttcatgagctggagatttataatagagat 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctataggcaagacaagaaaaggactatacctttcatgagctggagatttataatagagat 495

                                                                       
Query: 296 aatgtttcaagatgacagatggttaaaggcacctcttgattcagagaagagagagtgctt 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 496 aatgtttcaagatgacagatggttaaaggcacctcttgattcagagaagagagagtgcgt 555

                                                                       
Query: 356 ctctatgtggacacatggcttgcttcctggggaaaaagtggagagatggaagcacttgtg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctctatgtggacacatggcttgcttcctggggaaaaagtggagagatggaagcacttgtg 615

                                                                       
Query: 416 ggcctcctggatgagtgtggtatttgatcatctgcttggcgtctttctgcctgcatgcag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggcctcctggatgagtgtggtatttgatcatctgcttggcgtctttctgcctgcatgcag 675

                                                                       
Query: 476 ccacccagtaatcagaggtcctgggccacatggttcacatggagactgttacccatcacc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccacccagtaatcagaggtcctgggccacatggttcacatggagactgttacccatcacc 735

                                                                       
Query: 536 tgctccgacactactgctgggagtgttttctttctttaattaaatcccttgggtaaaagg 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgctccgacactactgctgggagtgttttctttctttaattaaatcccttgggtaaaagg 795

                                                                       
Query: 596 atctttccaatttgaaaaaaa----cgtttggaatgctctgcagaagtaagcagattaaa 651
           |||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||
Sbjct: 796 atctttccaatttgaaaaaaaaaaacgtttggaatgctctgcagaagttagcagattaaa 855

                               
Query: 652 -gggggggggggcgccaggc 670
            |||||||||||||||||||
Sbjct: 856 agggggggggggcgccaggc 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1075
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1065
Effective search space:   702900
Effective search space used:   702900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)