Query= MSMg01no541_j20.b1 MSMg01no541_j20.b1 CHROMAT_FILE:
MSMg01no541_j20.b1 PHD_FILE: MSMg01no541_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:20 2005
(653 letters)
>mm_chr17_56364953_56366008
Length = 1056
Score = 932 bits (482), Expect = 0.0
Identities = 539/560 (96%), Gaps = 6/560 (1%)
Strand = Plus / Minus
Query: 100 cccagctttttttttttttt--aagatttatttatttattatatgtaagtacagtgtagc 157
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 cccagctttttttttttttttaaagatttatttatttattatatgtaagtacagtgtagc 997
Query: 158 tgtcttcagacactccagaagagggcatcagatcttgttagggatggttgtgagcctcca 217
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 996 tgtcttcagacactccagaagagggcatcagatcttgttacagatggttgtgagccacca 937
Query: 218 agaggttgctgggatttgaactcaggaccttcggaagagcagtcggtgctcttaacc-gc 276
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 936 tgtggttgctgggatttgaactcaggacctttggaagagcagtcggtgctcttaaccatc 877
Query: 277 tgagccatctctccagcccctaccctcagcttttaactgaactaaaactggggcccaatg 336
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tgagccatctcaccagcccctaccctcagcttttaactgaactaaaactggggcccaatg 817
Query: 337 tcaggcaggtcccattgga---ttttttttctgctcagacattggggagttctgcttgga 393
||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct: 816 tcaggcaggtcccattggatttttttttttctacccagacattggggagttctgcttgga 757
Query: 394 gatggggctggctgagggaacggtttgtgttccttctctagagccaaggtcagagcacgg 453
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 756 gatggggctggctgagggaacagtttgtgttccttctctagagccaaggtcagagcatgg 697
Query: 454 acggggccattcatacccagcacctccactccctctgggctaaagtggatttgggctccc 513
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 696 acggggccattcatacccagcacctccactccctctgggctaaaatggatttgggctccc 637
Query: 514 attttggtgaggtatctcttcccagcaggggtcatgggcacctaggaataaccataaatg 573
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 636 attttggtgaggtctctcttcccagcaggggtcatgggtacctaggaataaccataaatg 577
Query: 574 aatgagttatccatcctactaccaagtctacctctcttcggcggtccagtgccccttgca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aatgagttatccatcctactaccaagtctacctctcttcggcggtccagtgccccttgca 517
Query: 634 cctatgtttttgatttgaca 653
||||||||||||||||||||
Sbjct: 516 cctatgtttttgatttgaca 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1056
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1046
Effective search space: 672578
Effective search space used: 672578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_j20.g1 MSMg01no541_j20.g1 CHROMAT_FILE:
MSMg01no541_j20.g1 PHD_FILE: MSMg01no541_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:20 2005
(679 letters)
>mm_chr17_56180122_56181200
Length = 1079
Score = 1232 bits (637), Expect = 0.0
Identities = 678/713 (95%), Gaps = 34/713 (4%)
Strand = Plus / Plus
Query: 1 cagagcagttcggacctttgcaatgggcggggaaattgaggcccgtgctcacttgagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cagagcagttcggacctttgcaatgggcggggaaattgaggcccgtgctcacttgagctc 226
Query: 61 tggacaccagagtagcagcaactctgcggggcagggctagtccaggaaggtcggtttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tggacaccagagtagcagcaactctgcggggcagggctagtccaggaaggtcggtttggg 286
Query: 121 tggttaaagcatagccaggaaccctttctgggtcccgaaaaggggtcctttgtgagtgtg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 287 tggttaaagcatagccaggaaccctttctgggtcccgaaaaggggccctttgtgagtgtg 346
Query: 181 gtatggaccagtcgggtacgtgttaggagtctttgtagcatgcggtaggcttcccgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtatggaccagtcgggtacgtgttaggagtctttgtagcatgcggtaggcttcccgaaat 406
Query: 241 gtggggtgcctattccccgctaaattgtatccccagtgtgtgttgaacgattgaggggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtggggtgcctattccccgctaaattgtatccccagtgtgtgttgaacgattgaggggct 466
Query: 301 ggaaaagacgaggtcggtcctgatagactaagatttctccaattgagcaccactgactag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggaaaagacgaggtcggtcctgatagactaagatttctccaattgagcaccactgactag 526
Query: 361 acagcccttctgggtacattacactagtctgcaagctcggagatgaggggaattggggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acagcccttctgggtacattacactagtctgcaagctcggagatgaggggaattggggat 586
Query: 421 ggccaatttcaggatggagagccgcatcctcaatctccatccacttctgggataactctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggccaatttcaggatggagagccgcatcctcaatctccatccacttctgggataactctg 646
Query: 481 gccccttttacagttctgatcatcaaagat-c---------------------------- 511
|||||||||||||||||||||||||||||| |
Sbjct: 647 gccccttttacagttctgatcatcaaagatacacacacacacacacacacacacacacac 706
Query: 512 -----cacacacacacacccttcacagcctggtattccaggaaggctggagctgttgttc 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acacacacacacacacacccttcacagcctggtattccaggaaggctggagctgttgttc 766
Query: 567 tgactggcttgagaattttatgtgggcattaatagtcgtacaattcctggactctcatgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgactggcttgagaattttatgtgggcattaatagtcgtacaattcctggactctcatgg 826
Query: 627 agcattgtttttatttaaccaaggtggaacgtttaaaaccgacactattgctc 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 agcattgtttttatttaaccaaggtggaacgtttaaaaccgacactattgctc 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
