BAC Information

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BAC

Clone NameMSMg01-541K03
Chromosome17 (Build37)
Map Location 25,328,249 - 25,328,868
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965
Downstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541K03.T7 (MSMg01no541_k03.b1)MSMg01-541K03.TJ (MSMg01no541_k03.g1)
ACCAG607602AG607603
length7531,351
length of high quality
(start - end)
624 (49 - 672)---
definitionCHROMAT_FILE: MSMg01no541_k03.b1 PHD_FILE: MSMg01no541_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:21 2005CHROMAT_FILE: MSMg01no541_k03.g1 PHD_FILE: MSMg01no541_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGAAGCTCAGCTTGGATCCTCTGCAAGAGCAGTGCATGGTC
CTGACTGCTGAGCCATCTCTCTAACCCCAACCCCTCACAGAAAGGTTTTA
AATGTATATATAGCTGCTGTTAATGTAGCTTGAGGGCCAAGCTAGATAAA
CAGTGTAGCCTGCTGAGCTTCAGTTACAGTGGTATAGAGCCAGCAGTATA
GTTCAGTGAGCAAACAACATTTACTGCCAAGTGAAGATTGACTTAAACTT
AATGACTTTAACTTTATCTCAGAGACTCGCATAGTGGAGGAAGAAAACTC
ATACACGTTATCCTCTGACTCCTGTACATATGTTATAGCACATATGCATG
TTTGCACGTGCATTCACACACATACTATCTAAATACATACAATGTATTTA
TTTTTAGAAGTAGCCTTTAGTCCTGGCTGCTCTGGAAGTCACTATGTAGA
CCGGGCTGGCTTTGAATACACAGAGATCCACCTGCCTCTGCCTCCTAAGT
GCTAGATTGAAGGTGTGCAACCACCTATGGTATTTAGTCTACCAAAGCTG
TGCTGCTTACATCCTCTTGAACTGGTGGTTCCTTTAAACATGTTGTTAGA
AGACAGGTGACTGTCTGGCTGAGACCCAGGCTCAGTTCCTAGTTTTCCAT
GTTCTATTGGTCACCTTGGGACTGCGGCTACCTGAGCCTGGAGCTGGAAG
ACG
TATGGAGAAGTGGTAGGTGAGGTGTTTGGTCGCCCGAATGTACTAATGGT
GTACTACACTGAGTCGGAACGCAGTGGNNTCTTTCGCACACTCTTANCGT
GGACATCTTATTTNCAATTGTATCTCGCTGGCAACTTCTTAGCAGCGGGT
CTCCTTCCACGAAAAGGTTGAAGAACATGAACTCCCACATCTTNTATACT
TCTCTTGGTTGGAATATCTCCAANGGTCCTTTTCTCTATGCTTGTAAAGG
AAGTGGTCCTACACCTTAGATCCCACCAGGACCTTATTGCCCATGTGGTA
TTTTTTAGTAATCAAGCGTGAAATCCTTGTTTGTGCTTATGAAAATGGCG
GGAACGAATACCTATAACTCTCCTAAATCCCCTTGTAATGTGGGAAATAA
CTCAAACGGGCCCGGGGAATAAAAGTGGGCACCCTACATGTGGGTGCCTT
CATTAACTATGTGCCATTACTTAATCCACAAAAACTTCCTCTTCTTCTTT
CAATGATGGCTCGTGGCTATATAGGCGCGTTTCCTACACAAATGTTTCCA
CACCTCCACAGTGCCTCTTCCTCTCTCTACTAAAATAACAAACGCCTCGT
TCTGTTCTCTTGCTGTACGTGTCGTATTCGCATTATCACCACGCGCAGCC
TCTGCAACTCTAGANATATATTTTATTCTCTCTTCCGTAATTAATATTCG
CCGCCTCTCCACTCTGTCGTTATTATCATATATTACACATCTCGCGCGCG
TTTCTCGTCTGTCGTATTGTCATATACAGATGTTGTACGCTCCTCGCCCG
CCCTCTTATTCTCTCCCGCTCGCTCCGCCGTGCCCTCTGATTATGGCGCG
ATTATAACTACATGTTCATTTATTGATGTCACTGTCTGCTCACTCCACTA
TACATGGCCGTGATTGTGTCGTCACCCTTACACTCCCGTCACCTTCTTTT
ATCGCGCATCTCCCNTTCAGCTCATCCGNCTTATTTGTTATACTGTGTCC
TATGATCAGCATTCGCGTTCTAGCTGTATATTATTCTCTCTACCTCTACT
TGCAACTCACANCTATCTTACTCCTTGTTNATCGTTGTTCGTGGTGGTAT
ATGTATCTAAATATTTCCGATCGTCTCCTGCTCTCGTGGCTGTCGTCCGC
TGTGAAGTATCATACACNGCTCATTTGTCACGTGTNACTAATAACCACTC
TTCATTTATGTCTGCTCTTCTCTGCGGCGCGCAGCCACTCATACTACAGT
CTGATCGATAATCTATACATCGATAACCATATGCTAGCGTCCAGTTTCGT
TGTGTCGTCACGTCAGTGTATCTGTCNGTCGACAACCTTGTTGCATAAGG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_k03.b1 MSMg01no541_k03.b1 CHROMAT_FILE:
MSMg01no541_k03.b1 PHD_FILE: MSMg01no541_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:21 2005
         (624 letters)



>mm_chr17_25328045_25329068
          Length = 1024

 Score = 1191 bits (616), Expect = 0.0
 Identities = 619/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggaagctcagcttggatcctctgcaagagcagtgcatggtcctgactgctgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggaagctcagcttggatcctctgcaagagcagtgcatggtcctgactgctgag 264

                                                                       
Query: 65  ccatctctctaaccccaacccctcacagaaaggttttaaatgtatatatagctgctgtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatctctctaaccccaacccctcacagaaaggttttaaatgtatatatagctgctgtta 324

                                                                       
Query: 125 atgtagcttgagggccaagctagataaacagtgtagcctgctgagcttcagttacagtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtagcttgagggccaagctagataaacagtgtagcctgctgagcttcagttacagtgg 384

                                                                       
Query: 185 tatagagccagcagtatagttcagtgagcaaacaacatttactgccaagtgaagattgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatagagccagcagtatagttcagtgagcaaacaacatttactgccaagtgaagattgac 444

                                                                       
Query: 245 ttaaacttaatgactttaactttatctcagagactcgcatagtggaggaagaaaactcat 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 ttaaacttaatgactttaactttatctcagggactcgcatagtggaggaagaaaactcat 504

                                                                       
Query: 305 acacgttatcctctgactcctgtacatatgttatagcacatatgcatgtttgcacgtgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acacgttatcctctgactcctgtacatatgttatagcacatatgcatgtttgcacgtgca 564

                                                                       
Query: 365 ttcacacacatactatctaaatacatacaatgtatttatttttagaagtagcctttagtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcacacacatactatctaaatacatacaatgtatttatttttagaagtagcctttagtc 624

                                                                       
Query: 425 ctggctgctctggaagtcactatgtagaccgggctggctttgaatacacagagatccacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggctgctctggaagtcactatgtagaccgggctggctttgaatacacagagatccacc 684

                                                                       
Query: 485 tgcctctgcctcctaagtgctagattgaaggtgtgcaaccacctatggtatttagtctac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcctctgcctcctaagtgctagattgaaggtgtgcaaccacctatggtatttagtctac 744

                                                                       
Query: 545 caaagctgtgctgcttacatcctcttgaactggtggttcctttaaacatgttgttagaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaagctgtgctgcttacatcctcttgaactggtggttcctttaaacatgttgttagaag 804

                               
Query: 605 acaggtgactgtctggctga 624
           ||||||||||||||||||||
Sbjct: 805 acaggtgactgtctggctga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)