NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTGAGGAATACTAAAGGGCAGAGAAGCACTTGAAAAAA
TCTTCAACATCCTTAATAATCAGGGAATTGCAAATCAAAACAACCATGAG
ATTCTACTTCCTACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGTGAGGTTGTAGAGAAAGAGGAACACTCCTCCATTGCTGG
TGGGATTTCAAGCTGGTGCAACCACTCTGGAAATCAGTCTGGCATTTCCT
TGGAACTGGACATAGTACTACCACTAGATCCAGCAATACCTCTCCTGGGC
CTATACCTAGAAGATATTCCAACTGGTAATAAGGACACATGCTCCACTAT
GTTCATAGCAGCCCTATTTATAATAACGAGAAGCTGGAAAGAATCCAGAT
GTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAATACTACTCAGCTATTAAAAACAATGAATTTACGAAATTCTTGGGCAA
ATGGATGTATCTGGAGGACATCATCCTGAGTGAGGTAACCCAATCACAAA
AGAAGTCACTTGATATGCACTCTCTGATAAATGGATATTAGCCCAGAAAA
CTAGAATACCCAAGATACAACTTCCAAAACACAAGAAAATCAAGAAGGAA
GACCAATGCGTGAATACTTCATTCCTCCCTAGAAT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTTCTGAAAAGAAATGATTA
ATGAATATGGTCTCTGTGTAACTTCACAAAGAAAAGGTCATGGTTACTAT
TGAGTGTTAAATGTTGAAAATGTCGCAGGTTGGAGAATGGTTTTATCCTA
AACTGATATTTTAAATAAAAATGGATTTCTTTCTAGCCAATTTTTATAAG
CAACCTGGAGGCTCTACCAAGTGCTCTTAACTGGTGAATCCTATACATTT
AAAATTTTCAACACTCCTTCTTTGGAACAGTGGAGGCTCTCTTTCTCTCA
GTAGGGCTAGTACCTCATTTGCAAGTTTTAAGAGATTTGCAAGCTTGAAG
GCTTTGAGACTCCTGGGCAGGAATGAGACAGGAATTCACATCTGTCCCAG
TCAATGCTGATGTGGAGATTTGGTGTCTGTTTAATGTCCTTTTCAAAAGG
CTGGCTATGTAAGTGCCCTTTGGCTACACATTAACTATTTTTATTCACTA
TACAATTTCTCTGGGTTTCAGCTCCAAGGTTCTGCTTAAGTTTTTGCTGT
GCTGCTGAGTAATAACAGGAAAAAGGTAAAAATAAATAAATAAATAAATA
AATAAATAAAAATTATATTTAAAAAAATCAGATATAGGTATCCTTATTTT
CAAATCTGTTTTTTGTTTGTTATTGTTTTGTTTGTTTGTTTTTCTCTTGG
GGTTCCAACATGCTGG

Query= MSMg01no541_k15.g1 MSMg01no541_k15.g1 CHROMAT_FILE:
MSMg01no541_k15.g1 PHD_FILE: MSMg01no541_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:24 2005
         (641 letters)



>mm_chr17_55233137_55234177
          Length = 1041

 Score = 1212 bits (627), Expect = 0.0
 Identities = 639/645 (99%), Gaps = 4/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccttctgaaaagaaatgattaatgaatatggtctctgtgtaacttcacaaagaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 acccttctgaaaagaaatgattaatgaatatggtctctgtgtaacttcacaaagaaaagg 693

                                                                       
Query: 61  tcatggttactattgagtgttaaatgttgaaaatgtcgcaggttggagaatggttttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcatggttactattgagtgttaaatgttgaaaatgtcgcaggttggagaatggttttatc 633

                                                                       
Query: 121 ctaaactgatattttaaataaaaatggatttctttctagccaatttttataagcaacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctaaactgatattttaaataaaaatggatttctttctagccaatttttataagcaacctg 573

                                                                       
Query: 181 gaggctctaccaagtgctcttaactggtgaatcctatacatttaaaattttcaacactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaggctctaccaagtgctcttaactggtgaatcctatacatttaaaattttcaacactcc 513

                                                                       
Query: 241 ttctttggaacagtggaggctctctttctctcagtagggctagtacctcatttgcaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttctttggaacagtggaggctctctttctctcagtagggctagtacctcatttgcaagtt 453

                                                                       
Query: 301 ttaagagatttgcaagcttgaaggctttgagactcctgggcaggaatgagacaggaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttaagagatttgcaagcttgaaggctttgagactcctgggcaggaatgagacaggaattc 393

                                                                       
Query: 361 acatctgtcccagtcaatgctgatgtggagatttggtgtctgtttaatgtccttttcaaa 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acatctgtccctgtcaatgctgatgtggagatttggtgtctgtttaatgtccttttcaaa 333

                                                                       
Query: 421 aggctggctatgtaagtgccctttggctacacattaactatttttattcactatacaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aggctggctatgtaagtgccctttggctacacattaactatttttattcactatacaatt 273

                                                                       
Query: 481 tctctgggtttcagctccaaggttctgcttaagtttttgctgtgctgctgagtaataaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tctctgggtttcagctccaaggttctgcttaagtttttgctgtgctgctgagtaataaca 213

                                                                       
Query: 541 ggaaaaaggtaa----aaataaataaataaataaataaataaataaaaattatatttaaa 596
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 212 ggaaaaaggtaaaaataaataaataaataaataaataaataaataaaaattatattttaa 153

                                                        
Query: 597 aaaatcagatataggtatccttattttcaaatctgttttttgttt 641
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaaatcagatataggtatccttattttcaaatctgttttttgttt 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)