Query= MSMg01no541_n07.b1 MSMg01no541_n07.b1 CHROMAT_FILE:
MSMg01no541_n07.b1 PHD_FILE: MSMg01no541_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:38 2005
(609 letters)
>mm_chr17_14950038_14951046
Length = 1009
Score = 1127 bits (583), Expect = 0.0
Identities = 596/605 (98%), Gaps = 8/605 (1%)
Strand = Plus / Minus
Query: 5 gaattccactttatactggacgttgattgattgattgattgattgattgattgatggcta 64
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 981 gaattccactttatactggacg--------ttgattgattgattgattgattgatggcta 930
Query: 65 aatgagtggtttgagacagaatgccactctatggtccatgagggtcctgaatttggagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aatgagtggtttgagacagaatgccactctatggtccatgagggtcctgaatttggagtg 870
Query: 125 atctttgtgcctcaacctctccagtgctaggattacaagattgagccatcatgattggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 atctttgtgcctcaacctctccagtgctaggattacaagattgagccatcatgattggct 810
Query: 185 taagggtgtatttttaaaggattataattaagaattttatgtgatatgtgtattacactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 taagggtgtatttttaaaggattataattaagaattttatgtgatatgtgtattacactt 750
Query: 245 taactttcaaaattaaggtcatttaaacaacaaaaatgtaaaaatctctgaatcttactc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 taactttcaaaattaaggtcatttaaacaacaaaaatgtaaaaatctctgaatcttactc 690
Query: 305 agcagcaaattattgaaggcccattttccatctgttaatagaattataaggactgcctag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agcagcaaattattgaaggcccattttccatctgttaatagaattataaggactgcctag 630
Query: 365 cagcctaaatgaaatcccagcttcttgcagaggccaaaggcactaatagcattagtaagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cagcctaaatgaaatcccagcttcttgcagaggccaaaggcactaatagcattagtaagt 570
Query: 425 gtgggaaactggttgagttggccaattcagggcaaggctctcagctttagggtgtattgt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 569 gtgggaaactggttgagttggccaattcagggcaaggctctcagctttagggcgtattgt 510
Query: 485 ccccagagttatctgccgagctgtcgtgaaaagatgattatttttgattctgctggttat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccccagagttatctgccgagctgtcgtgaaaagatgattatttttgattctgctggttat 450
Query: 545 gcagacttgagtataaacactcttaccagacagcattttgagaaaataaactctacgtct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcagacttgagtataaacactcttaccagacagcattttgagaaaataaactctacgtct 390
Query: 605 gacgc 609
|||||
Sbjct: 389 gacgc 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_n07.g1 MSMg01no541_n07.g1 CHROMAT_FILE:
MSMg01no541_n07.g1 PHD_FILE: MSMg01no541_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:38 2005
(617 letters)
>mm_chr17_14764455_14765468
Length = 1014
Score = 1154 bits (597), Expect = 0.0
Identities = 611/617 (99%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 1 ctcaggaatacaagtacacaattcatcacagacaaagctgaggtccatcacggtgacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaggaatacaagtacacaattcatcacagacaaagctgaggtccatcacggtgacaaa 260
Query: 61 aaccggattggagcttcgggatgatatttctgataagattccaaaagagttgaaagttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccggattggagcttcgggatgatatttctgataagattccaaaagagttgaaagttta 320
Query: 121 atacttccaacatatttaaagccaaaaaaaaaaaaaaacctctcctttttatgtcttcca 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 atacttccaacatatttaaagccaaaaaaaaaaaa---cctctcctttttatgtcttcca 377
Query: 181 aatcctctttcctctcaacttttccaaaatgctgaagggcaaaataaaacaaagaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatcctctttcctctcaacttttccaaaatgctgaagggcaaaataaaacaaagaaaatg 437
Query: 241 tgtttctactcacgaaatgttaaaataaatatgtaatgatttcttggtcaaaattttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtttctactcacgaaatgttaaaataaatatgtaatgatttcttggtcaaaattttcct 497
Query: 301 ttccaagataaaaataatttgaagtcacatctgataactattaatgcgaccgttccaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttccaagataaaaataatttgaagtcacatctgataactattaatgcgaccgttccaaag 557
Query: 361 cgtgaggcgtggtgttcctcaggcagctcacaggccggtgagcaggatgaaggagcgcat 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 558 cgtgaggcgtggtgttcctcaggcagctcacaggccggggagcaggatgaaggagcgcat 617
Query: 421 gcagattgcggcggatgatgggcagccagatgctgcaccacagagcaggattctggcctg 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 618 gcagattgcggcggatgatgggcagccagatgctacaccacagagcaggattctggcctg 677
Query: 481 caatgacagaggggccgtgcatctgccttaggctgctctacagtcatggcccaagagctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caatgacagaggggccgtgcatctgccttaggctgctctacagtcatggcccaagagctt 737
Query: 541 cccaaggccaaagtcccacagatactttgcgttttaacctctgatgcctcatggttatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cccaaggccaaagtcccacagatactttgcgttttaacctctgatgcctcatggttatgt 797
Query: 601 gggttgcgtaattgtgt 617
|||||| ||||||||||
Sbjct: 798 gggttgtgtaattgtgt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1014
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1004
Effective search space: 609428
Effective search space used: 609428
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
