Query= MSMg01no541_n19.b1 MSMg01no541_n19.b1 CHROMAT_FILE:
MSMg01no541_n19.b1 PHD_FILE: MSMg01no541_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:41 2005
(694 letters)
>mm_chr17_46943840_46944929
Length = 1090
Score = 1263 bits (653), Expect = 0.0
Identities = 680/691 (98%), Gaps = 6/691 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagagatccacctgcctctgcctcctgtgggctgggattaaaagagtgtgcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagagatccacctgcctctgcctcctgtgggctgggattaaaagagtgtgcca 264
Query: 65 ccatgcctagcaaggtagtctcttgtggtggctcagaaattctctatcagaaatggctgt 124
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 265 ccatgcctagcaaggtagtctcttgtggtggctcagaaattccctatcggaaatggctgt 324
Query: 125 agatgacatttgccactgtccctcccagcaatggctaagtgtggagttttccttcaacct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatgacatttgccactgtccctcccagcaatggctaagtgtggagttttccttcaacct 384
Query: 185 taaacacttctgctgtgtaaactctgccctggtggggagtcctatgaagtccgt-gagcc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 385 taaacacttctgctgtgtaaactctgccctggtggggagtcctatgaagtcc-tcgagcc 443
Query: 244 tttctttcgctgggccttagagctggctgaactgcaagcagccatgctaggggacacttt 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 tttctttcgctgggccttagagctggctgagctgcaagcagccatgctaggggacacttt 503
Query: 304 accatggcgtcttctaggagcaggaatctgtatttgttcagcatagcttgggtccttttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accatggcgtcttctaggagcaggaatctgtatttgttcagcatagcttgggtccttttg 563
Query: 364 aggagctgagtggcgacttcttcaaattcattgtccacttaaaacaaacaaacagggaga 423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggagctgagtggcgacctcttcaaattcattgtccacttaaaacaaacaaacagggaga 623
Query: 424 aaacagtaagagaatcatccatagactgagggcctctgttcctgagcctgacaggaactc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaacagtaagagaatcatccatagactgagggcctctgttcctgagcctgacaggaactc 683
Query: 484 atcccaacagccgatctgcagcaagcttccctctgcttaagatcctgcagagacccgggg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcccaacagccgatctgcagcaagcttccctctgcttaagatcctgcagagacccgggg 743
Query: 544 tccctgtgtggtaacagaactccctctaacacagcccagaaaaccaacatcggattactg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tccctgtgtggtaacagaactccctctaacacagcccagaaaaccaacatcggattactg 803
Query: 604 gcagctgctgtaggcgggccaggaagaaagagcaatggagtccactttctggctgacagg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcagctgctgtaggcgggccaggaagaaagagcaatggagtccactttctggctgacagg 863
Query: 664 ctagctccccaagcctctgccccttcacaga 694
|| ||||||||||||| |||||||||||
Sbjct: 864 ct----ccccaagcctctgtcccttcacaga 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1090
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1080
Effective search space: 738720
Effective search space used: 738720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_n19.g1 MSMg01no541_n19.g1 CHROMAT_FILE:
MSMg01no541_n19.g1 PHD_FILE: MSMg01no541_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:41 2005
(580 letters)
>mm_chr17_47138253_47139229
Length = 977
Score = 1042 bits (539), Expect = 0.0
Identities = 563/573 (98%), Gaps = 5/573 (0%)
Strand = Plus / Minus
Query: 9 acctctggaagagcagtcagtgctcttaaccactgagccatctctccagccctctttttt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 acctctggaagagcagtcagtgctcttaaccactgagccatctctccagccctctttttt 918
Query: 69 ggttttttaagacagggtttcctgtgtagccctggctgtcctgcaactcactctgtagac 128
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 917 ggttttttaagacagggtttcctgtgtagccttggctgtcctgcaactcactctgtagac 858
Query: 129 caggctggcctcaaaatcagatccacctgcctctgcttctcaagttcttgcactaaagtt 188
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 857 caggctggcctcaaaatcagatccacctgcctctgcttctcaagttcttggactaaagtt 798
Query: 189 gtgcaccaccactgcccagcaaatagtcttttagcaagactgattgcaacctaagtaaat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gtgcaccaccactgcccagcaaatagtcttttagcaagactgattgcaacctaagtaaat 738
Query: 249 gctgggtctgagagttgtgttagcagttcaggtaacggtgttttagtagagtgggtcatt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gctgggtctgagagttgtgttagcagttcaggtaacggtgttttagtagagtgggtcatt 678
Query: 309 taatctcacgttttgaggttcataatcc-tttactggcttagaggcaacatgacagacac 367
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 677 taatctcacgttttgaggttcataatccttttcctggcttagaggcaacatgacagacac 618
Query: 368 aaagacatttaagggaacaatgaacacatgggcggagggcaggcatgcgggacaggaggc 427
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaagacatttaagagaacaatgaacacatgggcggagggcaggcatgcgggacaggaggc 558
Query: 428 agggaaaggagtgggtttagagttagagacttacctgacccgctgcaggcctaagccccc 487
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 557 agggaaaggagtgggtttagagttagagtcttacctgacccgctgcaggcctaagccccc 498
Query: 488 ccccacacacacactttctttctgtgtataagtacaatgggattgtagacctatttgcag 547
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 c----cacacacactttctttctgtgtataagtacaatgggattgtagacctatttgcag 442
Query: 548 tcattcactggtgctcagtgttttaaacctgac 580
|||||||||||||||||||||||||||||||||
Sbjct: 441 tcattcactggtgctcagtgttttaaacctgac 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 977
Length adjustment: 10
Effective length of query: 570
Effective length of database: 967
Effective search space: 551190
Effective search space used: 551190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
