Query= MSMg01no542_i24.b1 MSMg01no542_i24.b1 CHROMAT_FILE:
MSMg01no542_i24.b1 PHD_FILE: MSMg01no542_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:38 2005
(648 letters)
>mm_chr17_77329663_77330710
Length = 1048
Score = 1098 bits (568), Expect = 0.0
Identities = 619/648 (95%), Gaps = 24/648 (3%)
Strand = Plus / Plus
Query: 5 gaattcctattttgctgttatactgttccttcattatactactgcttcaaaataatgcag 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctattttgctgttatgctgttccttcattatactactgcttcaaaataatgcag 264
Query: 65 taatattatccaatatgaaaacaataaatagaaaaataaaaactttaagatgaaagaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatattatccaatatgaaaacaataaatagaaaaataaaaactttaagatgaaagaaag 324
Query: 125 gaagaaagaaagaaaaagaaagaagggaggaaggaaggaaggaaggaagaaagaaggaag 184
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 325 gaagaaagaaagaaaaagaaagaagggaggaaggaaggaa-ga---aagaaaga---aa- 376
Query: 185 gaaggaaggaaggaaggaaggaaggaaggaaagaaagaaagaaagaaagaaagaaagaaa 244
||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 377 gaaagaaggaaggaaggaaggaaggaag------------gaaagaaagaaagaaagaaa 424
Query: 245 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggaaagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggaaagg 484
Query: 305 aagaagaagggggagaaggaagaatagagggagggaagggaggaaggaagaaaataagga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagaagaagggggagaaggaagaatagagggagggaagggaggaaggaagaaaataagga 544
Query: 365 aatagatcaactgtagaaaaggtaaaccctgatacattatcagcctggatgaacctccaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aatagatcaactgtagaaaaggtaaaccctgatacattatcagcctggatgaacctccaa 604
Query: 425 atcactattatgtgtagaaagcattaatactcaaatttttcatattataagattttaata 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agcactattatgtgtagaaagcattaatactcaaatttttcatattataagattttaata 664
Query: 485 aaattgcattcgtaacaagacagagtcacagaaattagagagagatgagccattgctaca 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 665 aaattgcattcgtaacaagacagagtcacagaagttagagagagatgagccattgctaca 724
Query: 545 taaatgcatgtctagtagtgtgtgtgtatatgtgtgtgacagagagagagagagagagag 604
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 taaatgcatgtctaggagtgtgtgtgtatatgtgtgtgacagagagagagagagagagag 784
Query: 605 agagagagagagagagagagagagagagagagaga----atatgagtg 648
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 785 agagagagagagagagagagagagagagagagagagagaatatgagtg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 202
Number of extensions: 54
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_i24.g1 MSMg01no542_i24.g1 CHROMAT_FILE:
MSMg01no542_i24.g1 PHD_FILE: MSMg01no542_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:38 2005
(608 letters)
>mm_chr17_77452955_77453965
Length = 1011
Score = 1093 bits (565), Expect = 0.0
Identities = 599/613 (97%), Gaps = 8/613 (1%)
Strand = Plus / Minus
Query: 1 attcaaccaaggtagaggtgcccaatgaagtgccttgaggagccaatgcctgcttcagtt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 attcaaccaaggtagaggtgcccaaagaagtgccttgaggagccaatgcctgcttcagtt 562
Query: 61 actctcacatacaaatgatttttacttattttagaacagctttttaaatctagataacct 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 actctcacatacaaatgatttttacttattttagaacagctttttaagtctagataacct 502
Query: 121 gtcctaaacaatagctcatgctgatatggaatttattggagatttggaaatttttctaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 gtcctaaacaatagctcatgctgatatggaatttattggagatttggaaa--tttctaaa 444
Query: 181 atggaatgcgtaagatctatggggacacaaaacatttcaagttatggaaa----acacac 236
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 atggaatgcgtaagatctatggggacacaaaacatttcaagttatggaaaacacacacac 384
Query: 237 acattgatacaaccactgggagcttgacatcaaggt-aaaaaatatttgacctttgtcac 295
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 acattgatactaccactgggagcttgacatcaaggtcaaaaaatatttgacctttgtcac 324
Query: 296 agctcaaatttctttatagaggacaaattttcatttggtgcatcactatcaatatcaatc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agctcaaatttctttatagaggacaaattttcatttggtgcatcactatcaatatcaatc 264
Query: 356 actcacatgtttctttgtcacactgaaagaaaggggtgtcagctgttgtagtatttttta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actcacatgtttctttgtcacactgaaagaaaggggtgtcagctgttgtagtatttttta 204
Query: 416 ttgttttattagatatatttttacatacatttcaaatgttattctgaaagttccctatac 475
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttgttttattagatat-tttttacatacatttcaaatgttattctgaaagttccctatac 145
Query: 476 cctccctctgccctgctcccctacccagccactcccacttcttggccctggtattcccct 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 144 cctccctctgccctgctcccctacccagccactcccacttcttggccctggcattcccct 85
Query: 536 gtactagggcatataaagtttgcaataccaaggggcctctcttcccagtgatggcctact 595
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gtactggggcatataaagtttacaataccaaggggcctctcttcccagtgatggcctact 25
Query: 596 tcattcctcctta 608
|||||||||||||
Sbjct: 24 tcattcctcctta 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1011
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1001
Effective search space: 598598
Effective search space used: 598598
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
