BAC Information

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BAC

Clone NameMSMg01-542L08
Chromosome17 (Build37)
Map Location 20,478,277 - 20,478,863
singlet/doubletsinglet
Overlap geneV2r6
Upstream geneEG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576
Downstream geneEG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542L08.T7 (MSMg01no542_l08.b1)MSMg01-542L08.TJ (MSMg01no542_l08.g1)
ACCAG608418AG608419
length749730
length of high quality
(start - end)		688 (53 - 740)601 (81 - 681)
definitionCHROMAT_FILE: MSMg01no542_l08.b1 PHD_FILE: MSMg01no542_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:50 2005CHROMAT_FILE: MSMg01no542_l08.g1 PHD_FILE: MSMg01no542_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCACTAAATCCATCTAGCCTTGAGCTTTTTTTTGTTT
AAGAGGTTTTTTAATGACTTCTTAAACCAAGAATGGAAAAAAGAAAGCAT
CTTCAATAAATGGTGCTGGTATAACTGGCTGTCTCTATGCAGAAAAATGA
AAATAGATCCATTTTTGACACCTTTCACAAAGCCTTAGTCCAAGTGGATC
AAGAACCTCAACATAAAACCAGATACATTGAATCTAATAGAAGAAAAAGC
AGGAAAGAGCCTTGAACTCATTGGCACAGGGGTGGATTTCCTCAGCAGAA
CGCCAAAGCCTCATGCTCTAAGATCAAGAATTGATAAATGGAACTTCATG
AAACTAGAAAGTTTTTGTAAGGCAAAGGACGTAGTCAATAAGACAATTTG
GCAACCTACAGATTGTGAAAGAAACTTCACTAACCCCACATCAGATAGAA
GGTTAAATATCTAAAATATATAAAGAACTCAAAAAATTAACCACCAAAAA
ATACCAAAGAACCAAATAAAAAAAAGGGTGTATAGAACTCAACCAAGATT
TCACAACTGAGGAATCTAGAATGACTAAGAAGCACCTAAAGAAATGTGCA
AAGTTCTTAGTGATCAGAGAAATAGAAATCAAAAAGACCCTGAGATTCCA
CCTAATACCAATCAGAATGGCTAAAATCAAAACCTCANGAGACAGCATA

TAATTTTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGAGTCCAGCTGCCTCT
GTGTTCCTATCATTCTGGAATCCTGGGATCCTGCTATCCTGTGTGTGTCA
GAGCTCCAGGGAGTCAAGCTTCCTTATGGATCCTGAAGTCCTGTTATCTT
GTCATGTTAGAGCACATGGAAGTTGAGATTCTTCTGGGTGTTGTGGGACT
TATTATGGAACCAATGTCCAAGATCTGTCCAGGGAACCTACTCAGCCTCA
AAGTCAAATGTTTGTTATATTTAAAATCCCATTTAAAGGAGATACTAAAT
CTGCATATTGTTAATATCCTTTTTAACAATATTTTCTCATTCAGGCCTTA
GTTAATTCTATTTTTCTTTTTTTTTTTTTTAGATATTTTATTTAACTACA
TTTCAGATGTTATTCCCTTTCCTGGTTTTCCCCTGAAAACCCCCTCTACC
TCACCTTCTCTCCCTGCTCACCAACACATCCAAACCTGCTTCCTGGTCCT
GGCATTCCCCTACACTAGAGCATAGAACCTTCACAGGACCAAGGATCTCT
CCTCCCATTGATAACCAACTAGGCCATACTCTGTTATATATGCAGCTAGA
GTGATGAGTCCCACCATGTGTTTTTTTTTCTGGGGGGGAAAAAGTGGGAG
GTTGNNNNNNNNNNNNNNNNGNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_l08.g1 MSMg01no542_l08.g1 CHROMAT_FILE:
MSMg01no542_l08.g1 PHD_FILE: MSMg01no542_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:50 2005
         (601 letters)



>mm_chr17_20478113_20479114
          Length = 1002

 Score =  882 bits (456), Expect = 0.0
 Identities = 558/600 (93%), Gaps = 14/600 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagagtccagctgcctctgtgttcctatcattctggaatcctgggatcctgctatcct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctcagagtccagctgcttctgtgttcctatcattctggaatcctgggatcctgctatcct 692

                                                                       
Query: 61  gtgtgtgtcagagctccagggagtcaagcttccttatggatcctgaagtcctgttatctt 120
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 691 gtgtgtgttagagctccagggagtcaagcttccttatggatcctgaagtccttttatctt 632

                                                                       
Query: 121 gtcatgttagagcacatggaagttgagattcttctgggtgttgtgggacttattatggaa 180
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 631 gccatgttagagcacatggaagttgagattcttctgggtgttgtgggactcattatggaa 572

                                                                       
Query: 181 ccaatgtccaagatctgtccagggaacctactcagcctcaaagtcaaatgtttgttatat 240
           |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 571 ccaatgcccaagatctgtccagggaacctgctcagcctcgaagtcaaatgtttgttatat 512

                                                                       
Query: 241 ttaaaatcccatttaaaggagatactaaatctgcatattgttaatatccttttt-aacaa 299
           ||||||||||||||||||||||||||||||||  ||||| ||| |||| ||||| |||||
Sbjct: 511 ttaaaatcccatttaaaggagatactaaatctatatattattagtatctttttttaacaa 452

                                                                       
Query: 300 tattttctcattcaggccttagttaattctatttttcttttttttttttttagatatttt 359
           ||||||||||||||||||||||||||||||||||||             ||| |||||||
Sbjct: 451 tattttctcattcaggccttagttaattctattttt-------------ttatatatttt 405

                                                                       
Query: 360 atttaactacatttcagatgttattccctttcctggttttcccctgaaaaccccctctac 419
           |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atttaattacacttcaaatgttattccctttcctggttttcccctgaaaaccccctctac 345

                                                                       
Query: 420 ctcaccttctctccctgctcaccaacacatccaaacctgcttcctggtcctggcattccc 479
           |||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||
Sbjct: 344 ctcaccttctctccctgctcaccaacccatccaaacctgctttctggaccttgcattccc 285

                                                                       
Query: 480 ctacactagagcatagaaccttcacaggaccaaggatctctcctcccattgataaccaac 539
           ||||||||| ||||||||| ||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 284 ctacactagggcatagaacattcacaggaacaaggacctctcctcccattgatgaccaac 225

                                                                       
Query: 540 taggccatactctgttatatatgcagctagagtgatgagtcccaccatgtgttttttttt 599
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 224 taggccatactctgctatatatgcagctagagtgatgagtcctaccatgtgttttttttt 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space:   586272
Effective search space used:   586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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