BAC Information

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BAC

Clone NameMSMg01-542O01
Chromosome17 (Build37)
Map Location 80,544,838 - 80,545,240
singlet/doubletsinglet
Overlap geneGalm
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps
Downstream geneSfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542O01.T7 (MSMg01no542_o01.b1)MSMg01-542O01.TJ (MSMg01no542_o01.g1)
ACCAG608546AG608547
length768772
length of high quality
(start - end)		605 (44 - 648)404 (75 - 478)
definitionCHROMAT_FILE: MSMg01no542_o01.b1 PHD_FILE: MSMg01no542_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:03 2005CHROMAT_FILE: MSMg01no542_o01.g1 PHD_FILE: MSMg01no542_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATCAGACCTTTCAGGAAAACCTAATACCAATACTCTTCAAACTATT
CCACAAAATAGAAACAGAAGAAACACTACCAAATTCATTCTATGAAGCCA
CAGTTACACTGCGTATTCTCCATTGTAGATGGAATTGTTTCTGTCTAATA
AGGAACTTGCCACAATTTCCTTTCATAGAGGACTTCATAAGAGATTTTTT
TCTACTTCTATCATGTTTAATGTTTCAAATAGATTTTAAAAACTGGTTGA
GTACATATTACTTTTAGCTTTAGAAGATATCATGTATATTTAAGAGTAAT
TTAACTATTATGAATTATTTAGATGGCTTAAAAATGTCAATACTGAGTTG
TATATTTTAAATAAATTTTATTAGTTTAATAAAAAAAAAGAATTATTGTA
CCATCAACAGAGGGGGAGGGTTGGAGAGATGGCTCAGTGGTTAAGAGCAC
TGACTGCTCTTCCAGAGGTCCTGAGTTCCATTCCCAACAACCACATGGTG
GCTCACAACCATCTGTAATAGGATCCAATGCACTTTTCTGGTGTGTGTCT
GAAGACAGTTACACATATAAATAAAAATAAATATTTTTAAAAAGAAGAAG
TTGAAATAGATGTAAGGAGAAAACAGGGCACTGCCCACATGCTGACCTTG
GGCACATACACACACACACACACTAACACACTAACACACACACTCTGAGA
ACACATATACATGGACAC

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCCATCTTGGCGTTAGAAATGAGC
TTGTTTGCCTCAGCCCCTCTAAAAATGCCAGAGGTAGTGTGTGTGTGCCG
GCTGTGTCATCCTTCAGCCTCTCCCAGGACTTCTGGTTGTCAGTCTTGTC
CTGTGTGGTAGATTCAGTGAAAAGGGCATTGGGCTTGCATTTAGAAGACC
TGGCTTTTAGATGATGAGACACAGTCTCAGTTTCAAAATAGGAGCTAACT
TTGTCGGTGGCACTTTATAAAGTTGTGGGTAAGAATATTGAAACCATTCT
AGTAGCAGGACCCTGAATGATTATCGGAGAGTTGGGTAGAACCACTTGAT
AGTCTCTTCCCTCAGTTAGCAACCCCCTGGAAGCTGAATCATGACCTCCT
AATTGTTTACGCTGTTAAAGAGGCTGTCCCATGGTTCAATAAGATGTGGA
GCCAAACTGCGTATTCTATCTCTATGACGTCCTCCTCATCTCATGATATC
AGCTTATCTTGATCACTTCAATCACACTGGTTCTATTTCCTGCGAACTGT
TGATCATGACTAGCTGGGCATGGGCTTCCCATTTTCACCTTTTTTCGTTG
TTTTGTGTCTGATATTTTCCTAAATTTAGCGGGTAAATTGTATCCTTACA
TATTCTTTTGATTTTTGAAATATTTAATAACAACCCTTTTTTTATTCTTT
GATCTTCATTCAATATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_o01.g1 MSMg01no542_o01.g1 CHROMAT_FILE:
MSMg01no542_o01.g1 PHD_FILE: MSMg01no542_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:03 2005
         (404 letters)



>mm_chr17_80544638_80545440
          Length = 803

 Score =  698 bits (361), Expect = 0.0
 Identities = 394/405 (97%), Gaps = 3/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccatcttggcgttagaaatgagcttgtttgcctcagcccctctaaaaatgccagagg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccatcttggcattagaaatgagcttgtttgcctcagcccctctaaaaatgccagagg 260

                                                                       
Query: 61  tagtgtgtgtgtgccggctgtgtcatccttcagcctctcccaggacttctggttgtcagt 120
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tagtgtgtgtgtgccggctgtg-catcctgcagcctctcccaggacttctggttgtcagt 319

                                                                       
Query: 121 cttgtcctgtgtggtagattcagtgaaaagggcattgggcttgcatttagaagacctggc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 320 cttgtcctgtgtggtagattcagtgacaagggcattgggcttgcatttagaagacctggc 379

                                                                       
Query: 181 ttttagatgatgagacacagtctcagtttcaaaataggagctaactttgtcggtggcact 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 ttttagatgatgagacacagtctcagtttcaaaatagtagctaactttgtcggtggcact 439

                                                                       
Query: 241 ttataaagttgtgggtaagaatattgaaaccattctagtagcaggaccctgaatgattat 300
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 ttataaagttgtgggtaaaaatattgaaaccatcctagtagcaggaccctgaatgattat 499

                                                                       
Query: 301 cggagagttgggtagaaccacttgatagtctcttccctcagttagcaaccccctggaagc 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 cggagagttgtgtagaaccacttgatagtctcttccctcagttagcaaccccctgcaagc 559

                                                        
Query: 361 tgaatcatgacctcctaattgtttacgc-tgttaaagaggctgtc 404
           ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 560 tgaatcatgacctcctaattgttta-gcctgttaaagaggctgtc 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 803
Length adjustment: 9
Effective length of query: 395
Effective length of database: 794
Effective search space:   313630
Effective search space used:   313630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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