BAC Information

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BAC

Clone NameMSMg01-543J02
Chromosome17 (Build37)
Map Location 41,463,483 - 41,463,956
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
Downstream geneLOC627577, LOC627626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543J02.T7 (MSMg01no543_j02.b1)MSMg01-543J02.TJ (MSMg01no543_j02.g1)
ACCAG609072AG609073
length731730
length of high quality
(start - end)
655 (77 - 731)640 (86 - 725)
definitionCHROMAT_FILE: MSMg01no543_j02.b1 PHD_FILE: MSMg01no543_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:59 2005CHROMAT_FILE: MSMg01no543_j02.g1 PHD_FILE: MSMg01no543_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACAACATATCGATCTCAAATGGCTGAGAAGCACCTAA
AGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCAAATCAAAACTGTA
GTCTCCCCTCCCCCAGCCTGAAACCTGCTTGTTCAGGGGTGGAGGTTTCA
GCTCAATCGTTCTGCCACGCCCACTGCTGGAACCTGCCGCTTTGCTGTTC
GGAGCCGTGCACGTGGTCACCTTGCTATTGGACCCCAAGATTAATTGGGG
GGAATTGGCCCCCCTTCCCCTGCTTCATAACTGCGTATGGAACAGTAAAA
TTGAGCTTTGATCAGAATGCCTGTCTTAGCTGCATTTATTTCTCTCGTCA
CCTAGCCCCTCTTCTCTTCCAGGTTTCCAAATGCCTTTCCAGGCTAGAAC
CCAGGCTGTGATCTGCTGTCCGGACACAACATTTGGCAAAACAACGAGGG
ACTGAGAAACAGCAAAGGATTTTTGGAAGAGGCACTGCTGGTTTGGAGGT
CCATGGAAGAAGAAAATAATTAAAGGATAAAGGAAATTCATACCGGAGAA
GGTCGGTATAGGCTAAGCTGAAACAGCGTTAAACCCGAGCGCTGGTTCAC
TTAGGTTCAGCAGTGAAGCTTAAGAGGAGCTGGGAACTATAACAGGAGGT
AGGCCGTGGCTCTCTGGAGCTACATTTTTAG
CCCAAACCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAACTGAGTAGC
TTCTGTATGACAAAGGACACCATCAATAGGACAAAACAGTAACCTACAAA
ATAATCCTCACCAAAGAGATAATTTTCTGGCGACCTCACTGGAAAAACAA
AGATGTGGGTTTGGGAGATATATATCATGATATGATATCAAATACCTGAA
GCATCACTAGTAACTACTTTCGACTAATTTAGCTATATTTTTTTGTTGTA
AATCCATACCTGATCAGAAGAAACACCATAGGGAAGAAAGATTTAATTTG
TTGTACAGTCTGAGAGGAAGCATTCCATCAACGCAGGGGTGGTTTGGCAA
CAGGAGTACAAACGCAGCTGGAAGCAGGAAATCTGTAGTTAGAAAAAAGA
GAATGAACAGGAAGTGAGATGAGCTGCTAAAACTCAAAGCTTGTCTCCAG
CAACCTACTTCCTTTTAGGAGGCCCAACGTCTTAAAGTTCTGATAAACAT
CCAACACAGGACTATCGAAGGGCTAAGAAGTGTTCAAATACCTGAAATGC
TGGGTATATATTTGCATTTAAACCACAAAATCTCAAACTTCAACTCTGGT
AACTCTGCACTTTATAGACTGATGCTTGACTTAATTGTCAAGATTGAAAG
GCTTTCTGCATGCTGAGTTTTTCTGTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_j02.g1 MSMg01no543_j02.g1 CHROMAT_FILE:
MSMg01no543_j02.g1 PHD_FILE: MSMg01no543_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:59 2005
         (640 letters)



>mm_chr17_41463483_41464517
          Length = 1035

 Score =  872 bits (451), Expect = 0.0
 Identities = 470/479 (98%), Gaps = 6/479 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaactgagtagcttctgtatgacaaaggacaccatcaataggacaaaacagtaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atgaaactgagtagcttctgtatgacaaaggacaccatcaataggacaaaacagtaacct 415

                                                                       
Query: 61  acaaaataatcctcaccaaagag-ataattttctggcgacctcactggaaaaacaaagat 119
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 414 acaaaataatcctcaccaaagagaaaaattttctggcgacctcactggaaaaacaaagat 355

                                                                       
Query: 120 gtgggtttgggagatatatatcatgatatgatatcaaatacctgaagcatcactagtaac 179
           ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||
Sbjct: 354 gtgggtttgggagatatatatc-----atgatatcaaatacctgaagcatcactagtaac 300

                                                                       
Query: 180 tactttcgactaatttagctatatttttttgttgtaaatccatacctgatcagaagaaac 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tacttttgactaatttagctatatttttttgttgtaaatccatacctgatcagaagaaac 240

                                                                       
Query: 240 accatagggaagaaagatttaatttgttgtacagtctgagaggaagcattccatcaacgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 accatagggaagaaagatttaatttgttgtacagtctgagaggaagcattccatcaacgc 180

                                                                       
Query: 300 aggggtggtttggcaacaggagtacaaacgcagctggaagcaggaaatctgtagttagaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aggggtggtttggcaacaggagtacaaacgcagctggaagcaggaaatctgtagttagaa 120

                                                                       
Query: 360 aaaagagaatgaacaggaagtgagatgagctgctaaaactcaaagcttgtctccagcaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaaagagaatgaacaggaagtgagatgagctgctaaaactcaaagcttgtctccagcaac 60

                                                                      
Query: 420 ctacttccttttaggaggcccaacgtcttaaagttctgataaacatccaacacaggact 478
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 59  ctacttccttttaggaggcccaacttcttaaagttctgataaacatccaacacaggact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1035
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1025
Effective search space:   645750
Effective search space used:   645750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)