Query= MSMg01no543_n07.b1 MSMg01no543_n07.b1 CHROMAT_FILE:
MSMg01no543_n07.b1 PHD_FILE: MSMg01no543_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:19 2005
(604 letters)
>mm_chr17_68344946_68345948
Length = 1003
Score = 542 bits (280), Expect = e-158
Identities = 326/352 (92%), Gaps = 18/352 (5%)
Strand = Plus / Minus
Query: 9 gaattcatttgaatttgtttctttgttattcacctatgaaaatcaacacagagaacgtta 68
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaattcatttgaagttgtttctttgttattcacctatgaaaatcaacacagagaacgtta 292
Query: 69 atcaatgccttgaaaaatctaccaatgtatctatgttcctacaacagccattgatgaagt 128
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atcaatgccttg-aaaatctaccaatgtatctatgttcctacaacagccattgatgaagt 233
Query: 129 tatgtggttttcttcattgttttgcttctcctcccctccctcctccttatcccctccctc 188
| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 232 tgtgtggttttcttcattgttttgcttctcctcccctccctcctcctcctccccttcctc 173
Query: 189 ctcctcctcccct-----------------tcctccttcttaccctcccccttttcttct 231
||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 172 ctcctcctcccctcctcctcctcctccccctcctccttcttactctcccccttttcttct 113
Query: 232 tctccccctcccctttccctccttttctccctcccactcctcttctttaaggctggcctc 291
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 112 tctccccctcccctttccctccttctctccctcccactcctcttctttaaggctggcctc 53
Query: 292 actcacaagtctcttgattcatcctcactagtgctaagactgcaggcttttg 343
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 52 actcacaagtctcatgattcatcctcactagtgctaagactgcaggcttttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_n07.g1 MSMg01no543_n07.g1 CHROMAT_FILE:
MSMg01no543_n07.g1 PHD_FILE: MSMg01no543_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:19 2005
(505 letters)
>mm_chr17_68172946_68173850
Length = 905
Score = 868 bits (449), Expect = 0.0
Identities = 496/531 (93%), Gaps = 31/531 (5%)
Strand = Plus / Plus
Query: 1 agtaacgctgcaggctatgaaaccaacatgtgaaaatcagtagttgtcatcccagtaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agtaacgctgcaggctatgaaaccaacatgtgaaaatcagtagttgtcatcccagtaaca 261
Query: 61 agaatcatgaggggaaaaaaatgtgaaaataatcccattcacaatcacccaaaaaagagg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaatcatgagggg-aaaaaatgtgaaaataatcccattcacaatcacccaaaaaagagg 320
Query: 121 gggagggtaagaaacggaccctggagggtagaaggggaagaagagggagaatcgagagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagggtaagaaacggaccctggagggtagaaggggaagaagagggagaatcgagagga 380
Query: 181 gcaggatccaaaagtctaagaggaagactgagtaaaggctgtgcaaaacaaagcaacact 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggatccaaaagtctaagaggaagagtgagtaaaggctgtgcaaaacaaagcaacact 440
Query: 241 gacaaacagaaactgaaggaggtcggccgtggtggcgcacgcctttaatcccagcccttg 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 441 gacaaacagaaactgaaggaggtcggccgtggtggtgcacgcctttaatcccagcacttg 500
Query: 301 ggaggcagaggcaggtggatttctgagttctaggccagcctggtctacagagtgagttcc 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ggaggcagaggcaggtggatttctgagttctagaccagcctggtctacagagtgagttcc 560
Query: 361 aggacagccagagctacacagagaaaccctgtctcgaaaaaccaaaccaaaccaaaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacagccagagctacacagagaaaccctgtctcgaaaaaccaaaccaaaccaaaccaa 620
Query: 421 accaaaccaa------------------------------cagagtgagttctaggacag 450
|||||||||| ||||||||||||||||||||
Sbjct: 621 accaaaccaaaccaaaccaaaccaaaccaaaccaaaccaacagagtgagttctaggacag 680
Query: 451 ccagagctatacagagaaaccctgtctcgaaaaaccaaaccaaaccaaaac 501
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagagctatacagagaaaccctgtctcgaaaaaccaaaccaaaccaaaac 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
