BAC Information

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BAC

Clone NameMSMg01-545E02
Chromosome17 (Build37)
Map Location 43,154,735 - 43,155,082
singlet/doubletsinglet
Overlap geneTnfrsf21
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
Downstream geneLOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545E02.T7 (MSMg01no545_e02.b1)MSMg01-545E02.TJ (MSMg01no545_e02.g1)
ACCAG610361AG610362
length731759
length of high quality
(start - end)
639 (36 - 674)348 (66 - 413)
definitionCHROMAT_FILE: MSMg01no545_e02.b1 PHD_FILE: MSMg01no545_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:10 2005CHROMAT_FILE: MSMg01no545_e02.g1 PHD_FILE: MSMg01no545_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGGC
CTTCCGAAGAGCAGTTGGTCCTCTTAACCACTAAGCCATCTCTCCATCCC
CAGCTTTAAATATTCTAGTATCAAGCTTCTTAAACTGTGAATCACAACCT
CACAGGCTCTTATAATTGAATGTGTTCACCAAAAAAACATCTGGCAATAG
TGAGAGGTCTCTGAACACATAATGACCAAATATTAATTCAAAAATCAACC
ATAAAATGAATATAGATGAAAAAAGATATTTCTAGTGACACTCACTGCTA
TAAGGCTCGTATTCAATACACCTCATTCTGAACACATAATGTGCTCACTT
TGCACTACAAATGCCCCTACACCAAGCAATTCCAATCAGCACTGAACACT
CAGGGTCAAGACCACATGTGCAGTGCACTGCAGTGTTTATTATACATGGT
TTTTGTCTCTTATAGAAACATGACAGTGTAGTTACAGAAAACAAGTGACT
GTTTTCCTACTACCTCTCAGTGCATGAGTATCAAATTAGTATACCACTGG
ATTGAATTGGATTGAAATGTTTGACTTGAAAAAGTACTCTTTAAACTCTT
TAAACTTACAGTTCATTTTAAAAACAAAAACACCCATAAAGCCAGGCATG
GTGATGCACACCTTTAACCCCAGGGCGCAGGAGTCAGAAGTAGGCAGATC
TCTATGAGTTCTGGTCTACATAGTAAGTTCA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAATTTTCTTCCACCTAATTCCCCACTTGGCCCCA
ATATTGGAAATAAAGGGCCAGCTGGGGGTAAGTTTTGGATAAGGGATGAT
GTCAGGTTTTGATCAGATAAAGTGATGGAGGATTGCAATCCGGGCACGCC
CCAGATTTGGGTGCTGAGAGAGCCTGCATCATCTTGCTTGGTGACATGTC
TAAACACAGAAAGGGAGAAATAAGAAAAGGATGGGGAAAATTAATCGTCC
TTTATGTAGCTCTTTCCCCTCCCCCTCGACTGAGAGCCACAGCGCCGGTT
GGCTCCAAGCCTGTGCTTTAGAGGCGCCTGGGTCTCTGGGTCCTTCTTCT
CCTCCTCCCCCTCCCACCCTATCCTCTTTTTTTTCTCGGTGTTTCTTCTT
GTCCATCTTCTTTTGTCTCGCCCTACATCCTGAGTTTTCTTAGCTTTTAC
GCGGCGTTCATTAGCCTGTTTATCTCGACCTTTGGGCTGGTTTTGTGTTC
TTTTTCCTCTATGGCTCTCCACTTGGTTTATTTGTGTGTGTTTGCGCGTG
TTCTTGGCCGCACTTTTTTTCCGTTGGCATTTTTTTCGCTGAACATTTCG
CGCTTGGTTATTGTTGGTCGTTTTCTATTTTGCGGTCTTTTTTTTGTTTT
TTGCGTCTGCTGTTTTTTTTCGTTTGTCCTGCTGCGTTTAGGGTTTGTTT
TTTTGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_e02.g1 MSMg01no545_e02.g1 CHROMAT_FILE:
MSMg01no545_e02.g1 PHD_FILE: MSMg01no545_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:11 2005
         (348 letters)



>mm_chr17_43154535_43155282
          Length = 748

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattttcttccacctaattccccacttggccccaatattggaaataaagggccagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaattttcttccacctaattccccacttggccccaatattggaaataaagggccagctgg 489

                                                                       
Query: 61  gggtaagttttggataagggatgatgtcaggttttgatcagataaagtgatggaggattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gggtaagttttggataagggatgatgtcaggttttgatcagataaagtgatggaggattg 429

                                                                       
Query: 121 caatccgggcacgccccagatttgggtgctgagagagcctgcatcatcttgcttggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caatccgggcacgccccagatttgggtgctgagagagcctgcatcatcttgcttggtgac 369

                                                                       
Query: 181 atgtctaaacacagaaagggagaaataagaaaaggatggggaaaattaatcgtcctttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atgtctaaacacagaaagggagaaataagaaaaggatggggaaaattaatcgtcctttat 309

                                                                       
Query: 241 gtagctctttcccctccccctcgactgagagccacagcgccggttggctccaagcctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtagctctttcccctccccctcgactgagagccacagcgccggttggctccaagcctgtg 249

                                                           
Query: 301 ctttagaggcgcctgggtctctgggtccttcttctcctcctccccctc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctttagaggcgcctgggtctctgggtccttcttctcctcctccccctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)