BAC Information

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BAC

Clone NameMSMg01-545E11
Chromosome17 (Build37)
Map Location 78,090,079 - 78,090,409
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624348, LOC545234, LOC100043887
Downstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545E11.T7 (MSMg01no545_e11.b1)MSMg01-545E11.TJ (MSMg01no545_e11.g1)
ACCAG610379AG610380
length714707
length of high quality
(start - end)
675 (40 - 714)506 (74 - 579)
definitionCHROMAT_FILE: MSMg01no545_e11.b1 PHD_FILE: MSMg01no545_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:12 2005CHROMAT_FILE: MSMg01no545_e11.g1 PHD_FILE: MSMg01no545_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGAATTTTTTAAGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAG
ATAACCCCATCACAAAAGAACACACATGATATTGATTTATTATTAAAAGT
TCATTTTTCTAGAGACATATCTGCTTCTGCTAGTACCCCCTTCATGGTTC
AAAAAATACATTTTTCACTATAATCTTTATAATGGAGTTAATCCAGCTAT
GACAAGATAGCCCCTGGACAAGAATGTCCTTAATTCAACTACAGTCAAAA
AATACTGTGCAAGAAAGGACATAAGATACAAGATAGTTGGCAGCTTTGCT
CTGCCAAGACTGAATGAGCTAGTCTTTTACAGGTCCTAATTAATTTAATG
TCTCTCAGATGATTCTGGGCCAGAAGGCTGAAGACAGATAGTTCAATGTC
TCCATAATTTGGTTAAACTTTGGAAGTTATGGTTTTGTGCTTTCTATATA
TCCAGGCAATATTTAATTTGTTTTTGGTTTTCAGATGGTGTTGAAGACTA
CATGTAGTCTCATAATCAAACTTGACTTGTTTAACATTGAAGAAGATGAT
GGTGATTTTAAAGGATGGGTTTCAGATAGTAAGACACATTAAATTAAAAA
CAAAATTCAGGTATAGAATTCTAAGCTCTTTAAATTAAAATAGATGTTAG
AATCGTGTATATAN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGGTTTACCAGCTTTTGTTCTGCAA
AATTTGTTGCTTAATTTAAAATTATTGGTTAAATAAAAATGGCTAGATCC
AATTACTCTGTGAATTAGAGGTAAGTGGGTTTTGAGTTACTAGGTTGGGG
GCTGTGGGAGAGAGAAGAAGAAGGAAAGACGTGGGGAGAGGGGGAAGCTG
TCCTGATAGGAGATGGACTGTGAGCACTTGGCCAGAGGAAACAGCAAGTA
TTTGGGGTACACCACTGGAGAAGTAGCCATCCAGGCAATTGGAATAGTAG
ATTAGGGGTTACCCCTAATAACTGTCAAAATAAATTAACCATAGTGTGAG
TCACCTTCATTTGTTAGCTAGAAAGGGACAAGTTTAAATTGGTTCAATAG
CACAGACATATCACATTGACAGCCTTAGGGGATTATATACAATTATTGCC
AGTTTAAGTGGGCTGTGGTTTCTCCAGCCTGGAGTTGATGTTGAGGTGGG
GGTAGAGAACAGTGGGGTTTCATTGAAGAGATGTAAGTAAGAGAGTGAAT
TTTTCAGTCTTGGATTTTAGTTGAAACCACTAGTTCTCTACTTGGCTCAA
AGTTTAATACTTATTCCTAGGACTATACAACAAGGGCTTTGACTTTCTAG
TTACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_e11.g1 MSMg01no545_e11.g1 CHROMAT_FILE:
MSMg01no545_e11.g1 PHD_FILE: MSMg01no545_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:12 2005
         (506 letters)



>mm_chr17_78089504_78090409
          Length = 906

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 176 tgtcctgataggagatggactgtgagcacttggccagaggaaacagcaagtatttggggt 235
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tgtcctgataggagatgggctgtgagcacttggccagaggaaacagcaagtatttggggt 847

                                                                       
Query: 236 acaccactggagaagtagccatccaggcaattggaatagtagattaggggttacccctaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 acaccactggagaagtagccatccaggcaattggaatagtagattaggggttacccctaa 787

                                                                       
Query: 296 taactgtcaaaataaattaaccatagtgtgagtcaccttcatttgttagctagaaaggga 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 taactgtcaaaataaattaaccatagtgtgagtcaccttcatttgttagctagaaaggga 727

                                                                       
Query: 356 caagtttaaattggttcaatagcacagacatatcacattgacagccttaggggattatat 415
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caagtttaaattggttcaacagcacagacatatcacattgacagccttaggggattatat 667

                                                                       
Query: 416 acaattattgccagtttaagtgggctgtggtttctccagcctggagttgatgttgaggtg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acaattattgccagtttaagtgggctgtggtttctccagcctggagttgatgttgaggtg 607

                                          
Query: 476 ggggtagagaacagtggggtttcattgaaga 506
           |||||||||||||||||||||||||||||||
Sbjct: 606 ggggtagagaacagtggggtttcattgaaga 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)