BAC Information

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BAC

Clone NameMSMg01-546E15
Chromosome17 (Build37)
Map Location 21,535,286 - 21,536,133
singlet/doubletsinglet
Overlap geneA830058L05Rik
Upstream geneEG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3
Downstream geneZfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546E15.T7 (MSMg01no546_e15.b1)MSMg01-546E15.TJ (MSMg01no546_e15.g1)
ACCAG611149AG611150
length742744
length of high quality
(start - end)
684 (57 - 740)522 (185 - 706)
definitionCHROMAT_FILE: MSMg01no546_e15.b1 PHD_FILE: MSMg01no546_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:32 2005CHROMAT_FILE: MSMg01no546_e15.g1 PHD_FILE: MSMg01no546_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCCACAG
GATAGAAGCTCTACAAGTGCAACATTTGTGACAAATCCTTCACCTGGTGT
GCATCTCTTAAAACACATAAAAAGTTCCATACTGGAGAGAAACCTTACAA
ATGCAGAAAATGTGGAAAGTCTTTTCCTCAGTTATCAACCCTTAAAAGAC
ATCAGAAAATTCATGAAGACAAGGGACATACTGGGGAGAAGCTTTACAAG
TGCAATGACTGTGACAGGTCCTATTCCTACCATTCGTCATTTAGAAGGCA
TCAGAAAATTCATTCTTCATAGAAATTATACAAGTGCAATGACTGTGACA
GGTCCTATTCCTACCATTCGTCATTTAGAAGGTATCAGAAAATTCATTCT
TCATAGAAATTATACAAATTCATAGAATGTGGTAAGTACTGTATTGAACT
GTCACGTCTTAAAATACATTATAGGATCCAGACTGGAAAGAAACAACTAT
ATGGACTGTGACAAATCATTAACCAATCACTCATATTTTAAAAGACAGCA
AAGTGTTCATACTGAAATGAGAGAGGCCTTACAGATATAAGGCATGTGAC
AAATCTTTTTATAAGTGCTTTACTCCTGGAGAACATCATAAAACTCATAT
TGGGAAGAAAAACACCAATTTAAATAATGTGACATAGCATTTGTCTTATA
TTCTCTACTTACAAATCACAACATTATACATAATGTAAACAN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATGCACTTGGTGGGTATAATTTTCAATAGGAAG
CAAGACTTGGAGATTATATATGACATACCTTTATATGGATTCTCAGAAGT
ATGACCTTTGTGATTTACAACACAATTAGAAGTCTTTAAAACTTATTTAA
TTACCTTTTGTCATTATTATTTTTTGAGATATGGTGGTGTATATAGTTCA
TTCAGGGTATCCTAGAACTTGCTATGTAGACCAGAGATCTTGCCTTTGCC
ACCCAAATACTGGAATTAATGATGTGTCCCACCTTGCCTAGAATTATGAA
CTTTTGATGTTAAACAAGATGAATATTTTTACTACAGCTTTTCCCAGGAG
CTAGAGAGATGGCCTAGTGGTTAAAACCACTGGCTGCTCTTATGGAGAGT
ATTGGGATTCACCTCCCAACACACATAGCAGTTCCCAACTCCCTTTAAGC
ATAGCACCAAGGGATCTATCTGATGCACCCTTTAGTCCCCACAGGCATCA
GGCATGCATGTAGTACACAGTAATACAAACAGAGAAGTACCCAGACACAC
ACACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAAGTAACTTCACACAGTTCAATTTGCAAATCATT
GTTTTAACTGAGACTCATATTTTCTGAGGTTTAAAGGCTAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_e15.b1 MSMg01no546_e15.b1 CHROMAT_FILE:
MSMg01no546_e15.b1 PHD_FILE: MSMg01no546_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:32 2005
         (684 letters)



>mm_chr17_21535254_21536337
          Length = 1084

 Score =  932 bits (482), Expect = 0.0
 Identities = 675/852 (79%), Gaps = 172/852 (20%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctctacaagtgcaacatttgtgacaaatccttcacctggtgtgcatctcttaaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 33  agctctacaagtgcaacatttgtgacaaatccttcacctggtgtgcatcccttaaaacac 92

                                                                       
Query: 61  ataaaaagttccatactggagagaaaccttacaaatgcagaaaatgtggaaagtcttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ataaaaagttccatactggagagaaaccttacaaatgcagaaaatgtggaaagtcttttc 152

                                                                       
Query: 121 ctcagttatcaacccttaaaagacatcagaaaattcatgaagacaagggacatactgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ctcagttatcaacccttaaaagacatcagaaaattcatgaagacaagggacatactgggg 212

                                                                       
Query: 181 agaagctttacaagtgcaatgactgtgacaggtcctattcctaccattcgtcatttagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agaagctttacaagtgcaatgactgtgacaggtcctattcctaccattcgtcatttagaa 272

                                                                       
Query: 241 ggcatcagaaaattcattcttcatagaaattatacaagtgcaatgactgtgacaggtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggcatcagaaaattcattcttcatagaaattatacaagtgcaatgactgtgacaggtcct 332

                                                                       
Query: 301 attcctaccattcgtcatttagaagg----------------------------tat--- 329
           ||||||||||||||||||||||||||                            |||   
Sbjct: 333 attcctaccattcgtcatttagaaggcatcagaaaattcattcttcatagaaattataca 392

                                                                       
Query: 329 ------------------------------------------------------------ 329
                                                                       
Sbjct: 393 agtgcaatgactatgacaggtcctattcctaccattcgtcatttagaaggcatcagaaaa 452

                                                                       
Query: 329 ------------------------------------------------------------ 329
                                                                       
Sbjct: 453 ttcattcttcatagaaattatacaagtgcaatgactgtgacaggtcctattcctaccatt 512

                                                                       
Query: 330 -----------------cagaaaattcattcttcatagaaattatacaaattcatagaat 372
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cgtcatttagaaggcatcagaaaattcattcttcatagaaattatacaaattcatagaat 572

                                                                       
Query: 373 gtggtaagtactgtattgaactgtcacgtcttaaaatacattataggatccagactggaa 432
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 573 gtggtaagtactgtattgaactgtcacatcttaaaatacattataggatccagactggaa 632

                                                                       
Query: 433 agaaacaactatatggactgtgacaaatcattaaccaatcactcatattttaaaagacag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 633 agaaacaactatatggactgtgacaaatcattaaccaatcactcatattttaaaagacat 692

                                                                       
Query: 493 caaagtgttcatactgaaatgagagaggccttacagatataaggcatgtgacaaatcttt 552
           |||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||
Sbjct: 693 caaagtgttcatactgaaa----agaggccttacagatgtaaggcatgtgacaaatcttt 748

                                                                       
Query: 553 ttataagtgctttactcctggagaacatcataaaactcatattgggaagaaaaacaccaa 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttataagtgctttactcctggagaacatcataaaactcatattgggaagaaaaacaccaa 808

                                                                       
Query: 613 tttaaataatgtgacatagcatttgtcttatattctctacttacaaatcacaacattata 672
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tttaaataatgtggcatagcatttgtcttatattctctacttacaaatcacaacattata 868

                       
Query: 673 cataatgtaaac 684
           ||||||||||||
Sbjct: 869 cataatgtaaac 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)