BAC Information

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BAC

Clone NameMSMg01-546I19
Chromosome17 (Build37)
Map Location 35,250,227 - 35,280,850
singlet/doubletdoublet
Overlap geneLy6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3
Upstream geneBrd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c
Downstream geneBat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546I19.T7 (MSMg01no546_i19.b1)MSMg01-546I19.TJ (MSMg01no546_i19.g1)
ACCAG611348AG611349
length736737
length of high quality
(start - end)		689 (38 - 726)660 (67 - 726)
definitionCHROMAT_FILE: MSMg01no546_i19.b1 PHD_FILE: MSMg01no546_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:53 2005CHROMAT_FILE: MSMg01no546_i19.g1 PHD_FILE: MSMg01no546_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,250,227 - 35,250,908)(35,280,191 - 35,280,850)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
ATATAGACCAGGCTAGCCTCAAACTCAAGAGATCCACTTGTTTTGTTTCC
CAAGCACAGGGATCAAAGGCGTACACCACCATGCCTGATCAGGAACTTCC
AGTATTTAGGGTCTGGTAGCATACACCTGTAATTCTAGCTCTTGAGGGGT
AGGGGCAGGAGGATCAAGAGTTCAAGGCCAGCTGAGGATACTTGAGACCT
TGTCTCAAAAAAAATCCCCTAAATACTAAAACAAAGATTCAACAGCTATC
ACCTCTAGCATCCGAGATATAATGCAAGGTGCCAGGACCCTTGAAGTGAT
CCAGGTTGCTCACTACACAAGGACATGGACTTGAGTTTCTTCTTAGGTGA
AAACCTGGCACAGGACGTGAGTTTAATATTCCAGGCTTTGGAGGTTATAG
TTGAAGTAGGGCATCTATCTTCAAACTTTGGTCTTTAGCTAAGCAGAGGG
GAAGGATGTGGCCTTTTTGGGTAATTTGAGAGGAAGCCATAAAATCGAGT
GGGTGGGGTTTGGTAATCCCGTTTGAATCCCACACTTAACTCTTTGACCT
GGCTACACCTGCCTACATCTGAACCTGACAGACAGACATACACACACACA
CACACACACACACACACACACACACACACACACCCTGCCGAAAAATGTGA
CACAGATTTTGCCAAGTTTTGATTTATTACGGAGGA

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTGGAACTGGAGTTCCAGATGGCTGTGAACCAC
CTTGTGGGTGCTAAGAATCAATCCCAGGTCCTCTGCAAGAACAACAAGAA
CCAGCTCTGATCTCAGCGTCTTAGGACACTGAATGGATAAGCCACTCCAG
AGCTGTCACTCAGCAGCTAGAGAACCACAACAGAATACCATTGCTCTATG
AGCCTGGGGGTAAAAAGGGCAGTACAGCCGGCCACTCACCTGCAAAAAAT
CAGTCATGCCCTGGAGAAAAGCAGGGACACCAGGCATTGCCACAGTGATG
GTGGGAGAAGCCATGCCTGGCCCCCCAGCCCCTGGCCCTGCAGGCCCCAG
CAGATTTCCCAGGAGCTGAGAGAACTGAAGATCAGCTGCAGAGGGCTGAG
GAGGTGGAGGCTGGGCAGGACCCCCAGGAGCAGGGCCAGCTGTGGTAGCT
GTGTTGGTAGTACCAGCACTAGCTGAAGCAGTGGCAGGAGCTGGAGCTGG
AGCCGGAGCCGGAGCTGGAGCCTGGGCCTGGGCCTGGGCCTGAGCCTGGG
CCTGGGCCTGAGCCTGAGCCATTCCTGGAGTCCCCTGAGCTGTCAGGAAC
CAAGGAGAGTACAATGTGAACAAGAGCCATATTCTAGCTGCCTCATTCCC
ATCTCATCTTTCCAGCAGGAAAACAAAAACTAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_i19.b1 MSMg01no546_i19.b1 CHROMAT_FILE:
MSMg01no546_i19.b1 PHD_FILE: MSMg01no546_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:53 2005
         (689 letters)



>mm_chr17_35250024_35251112
          Length = 1089

 Score = 1299 bits (672), Expect = 0.0
 Identities = 681/686 (99%), Gaps = 4/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatatagaccaggctagcctcaaactcaagagatccacttgttttgtttcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatatagaccaggctagcctcaaactcaagagatccacttgttttgtttcc 263

                                                                       
Query: 64  caagcacagggatcaaaggcgtacaccaccatgcctgatcaggaacttccagtatttagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagcacagggatcaaaggcgtacaccaccatgcctgatcaggaacttccagtatttagg 323

                                                                       
Query: 124 gtctggtagcatacacctgtaattctagctcttgaggggtaggggcaggaggatcaagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctggtagcatacacctgtaattctagctcttgaggggtaggggcaggaggatcaagag 383

                                                                       
Query: 184 ttcaaggccagctgaggatacttgagaccttgtctcaaaaaaaatcccctaaatactaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcaaggccagctgaggatacttgagaccttgtctcaaaaaaaatcccctaaatactaaa 443

                                                                       
Query: 244 acaaagattcaacagctatcacctctagcatccgagatataatgcaaggtgccaggaccc 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 acaaagattcaacagctatcacctctagcattcgagatataatgcaaggtgccaggaccc 503

                                                                       
Query: 304 ttgaagtgatccaggttgctcactacacaaggacatggacttgagtttcttcttaggtga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgaagtgatccaggttgctcactacacaaggacatggacttgagtttcttcttaggtga 563

                                                                       
Query: 364 aaacctggcacaggacgtgagtttaatattccaggctttggaggttatagttgaagtagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaacctggcacaggacgtgagtttaatattccaggctttggaggttatagttgaagtagg 623

                                                                       
Query: 424 gcatctatcttcaaactttggtctttagctaagcagaggggaaggatgtggcctttttgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcatctatcttcaaactttggtctttagctaagcagaggggaaggatgtggcctttttgg 683

                                                                       
Query: 484 gtaatttgagaggaagccataaaatcgagtgggtggggtttggtaatcccgtttgaatcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtaatttgagaggaagccataaaatcgagtgggtggggtttggtaatcccgtttgaatcc 743

                                                                       
Query: 544 cacacttaactctttgacctggctacacctgcctacatctgaacctgacagacagacata 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cacacttaactctttgacctggctacacctgcctacatctgaacctgacagacagacata 803

                                                                       
Query: 604 cacacacacacacacacacacacacacacacacacacacacaccctgccgaaaaatgtga 663
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 804 cacacacacacacacacacacacacacacacacacacac----cctgccgaaaaatgtga 859

                                     
Query: 664 cacagattttgccaagttttgattta 689
           ||||||||||||||||||||||||||
Sbjct: 860 cacagattttgccaagttttgattta 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_i19.g1 MSMg01no546_i19.g1 CHROMAT_FILE:
MSMg01no546_i19.g1 PHD_FILE: MSMg01no546_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:53 2005
         (660 letters)



>mm_chr17_35280114_35281173
          Length = 1060

 Score = 1276 bits (660), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggaactggagttccagatggctgtgaaccaccttgtgggtgctaagaatcaatccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctggaactggagttccagatggctgtgaaccaccttgtgggtgctaagaatcaatccca 678

                                                                       
Query: 61  ggtcctctgcaagaacaacaagaaccagctctgatctcagcgtcttaggacactgaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggtcctctgcaagaacaacaagaaccagctctgatctcagcgtcttaggacactgaatgg 618

                                                                       
Query: 121 ataagccactccagagctgtcactcagcagctagagaaccacaacagaataccattgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataagccactccagagctgtcactcagcagctagagaaccacaacagaataccattgctc 558

                                                                       
Query: 181 tatgagcctgggggtaaaaagggcagtacagccggccactcacctgcaaaaaatcagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatgagcctgggggtaaaaagggcagtacagccggccactcacctgcaaaaaatcagtca 498

                                                                       
Query: 241 tgccctggagaaaagcagggacaccaggcattgccacagtgatggtgggagaagccatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgccctggagaaaagcagggacaccaggcattgccacagtgatggtgggagaagccatgc 438

                                                                       
Query: 301 ctggccccccagcccctggccctgcaggccccagcagatttcccaggagctgagagaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctggccccccagcccctggccctgcaggccccagcagatttcccaggagctgagagaact 378

                                                                       
Query: 361 gaagatcagctgcagagggctgaggaggtggaggctgggcaggacccccaggagcagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaagatcagctgcagagggctgaggaggtggaggctgggcaggacccccaggagcagggc 318

                                                                       
Query: 421 cagctgtggtagctgtgttggtagtaccagcactagctgaagcagtggcaggagctggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagctgtggtagctgtgttggtagtaccagcactagctgaagcagtggcaggagctggag 258

                                                                       
Query: 481 ctggagccggagccggagctggagcctgggcctgggcctgggcctgagcctgggcctggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctggagccggagccggagctggagcctgggcctgggcctgggcctgagcctgggcctggg 198

                                                                       
Query: 541 cctgagcctgagccattcctggagtcccctgagctgtcaggaaccaaggagagtacaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cctgagcctgagccattcctggagtcccctgagctgtcaggaaccaaggagagtacaatg 138

                                                                       
Query: 601 tgaacaagagccatattctagctgcctcattcccatctcatctttccagcaggaaaacaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgaacaagagccatattctagctgcctcattcccatctcatctttccagcaggaaaacaa 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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