BAC Information

Click to search

BAC

Clone NameMSMg01-547L04
Chromosome17 (Build37)
Map Location 16,609,778 - 16,610,354
singlet/doubletsinglet
Overlap genenone
Upstream genePsmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547L04.T7 (MSMg01no547_l04.b1)MSMg01-547L04.TJ (MSMg01no547_l04.g1)
ACCAG612223AG612224
length753782
length of high quality
(start - end)		693 (35 - 727)245 (60 - 304)
definitionCHROMAT_FILE: MSMg01no547_l04.b1 PHD_FILE: MSMg01no547_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:24 2005CHROMAT_FILE: MSMg01no547_l04.g1 PHD_FILE: MSMg01no547_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAAT
TTTCACTAATGCTGCTATTTTCAACCTTTGCTCTTTACCACCTCCATCTA
GTAAGAAGGATTAAATATATTTGCCTTTTTTTCTCCACACTACAGAATGC
TGTCAGAAAAGAATACATGGTAAATATAAAATGAATGTGTAGAAAACACT
ATTAACTGCAGCCACTGTGCTGCAGATCTGAGACTCATTCATCTTGCATA
TCTGAAACTACTTGTCCTTTGTTCCTCTGTGCTCATATGAATTTTAAGAT
TGTTTTCTTATCTCTGAAAAAAAATGTTATTGGAAATTTGATAGGGATTG
GCAGAGCTTAACTTAATAGGATAAAATTCTCCCTCCACTATCTAGTTATT
AAATTTTGAGGTTCCCTTTCCCTTCTAGAAGAGCTCAGGGTTTCACAGGG
TAGATGATGGCATCACATCTAATGGAGAGTATTGGACAGAGGCTGTGGGC
AGATAGATGCCAGCAGATTGATGTAGCTGAATAGATCTTCTAAGATAACA
TTTTACCTTATTACCTAGTAAGTGATTTATGCATGTATAGTCATTTATGT
TTTCCTGTATGGCAGTTGTTATAATGAATAATATAACATGGGCAATCCAA
GGTTATATTTTTCCATATGGAAACTATGTAATACTTACTGGCGAAATATT
CATACAGTATTTCAGGGCCATTTTAAAGCCATTCATTTTTTTGCTAACTA
ATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTAGATTCAGTTGAACCACCAAAATTAACCAGGAAGAAGGA
AAAAATCCTAAAGACCAACAAATAAACAGGAATTTTAAAAATTAATAGAA
AATCTTCTAAGAAAAGCCCAGGACCAGATGGATTCACACCAGAACTTACC
AGACATTCACAGTAGATCTTTAACCACACCTTCTTAAACTGTTCCAAAAA
AGAAAGAAAAGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNTNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNTNN
NTTNNTTNTTTTTTTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_l04.b1 MSMg01no547_l04.b1 CHROMAT_FILE:
MSMg01no547_l04.b1 PHD_FILE: MSMg01no547_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:24 2005
         (693 letters)



>mm_chr17_16609262_16610354
          Length = 1093

 Score = 1108 bits (573), Expect = 0.0
 Identities = 576/577 (99%)
 Strand = Plus / Minus

                                                                        
Query: 117  tgtcagaaaagaatacatggtaaatataaaatgaatgtgtagaaaacactattaactgca 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 tgtcagaaaagaatacatggtaaatataaaatgaatgtgtagaaaacactattaactgca 1034

                                                                        
Query: 177  gccactgtgctgcagatctgagactcattcatcttgcatatctgaaactacttgtccttt 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 gccactgtgctgcagatctgagactcattcatcttgcatatctgaaactacttgtccttt 974

                                                                        
Query: 237  gttcctctgtgctcatatgaattttaagattgttttcttatctctgaaaaaaaatgttat 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  gttcctctgtgctcatatgaattttaagattgttttcttatctctgaaaaaaaatgttat 914

                                                                        
Query: 297  tggaaatttgatagggattggcagagcttaacttaataggataaaattctccctccacta 356
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 913  tggaaatttgatagggattggcagagcttaacttaataggatacaattctccctccacta 854

                                                                        
Query: 357  tctagttattaaattttgaggttccctttcccttctagaagagctcagggtttcacaggg 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853  tctagttattaaattttgaggttccctttcccttctagaagagctcagggtttcacaggg 794

                                                                        
Query: 417  tagatgatggcatcacatctaatggagagtattggacagaggctgtgggcagatagatgc 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  tagatgatggcatcacatctaatggagagtattggacagaggctgtgggcagatagatgc 734

                                                                        
Query: 477  cagcagattgatgtagctgaatagatcttctaagataacattttaccttattacctagta 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733  cagcagattgatgtagctgaatagatcttctaagataacattttaccttattacctagta 674

                                                                        
Query: 537  agtgatttatgcatgtatagtcatttatgttttcctgtatggcagttgttataatgaata 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673  agtgatttatgcatgtatagtcatttatgttttcctgtatggcagttgttataatgaata 614

                                                                        
Query: 597  atataacatgggcaatccaaggttatatttttccatatggaaactatgtaatacttactg 656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613  atataacatgggcaatccaaggttatatttttccatatggaaactatgtaatacttactg 554

                                                 
Query: 657  gcgaaatattcatacagtatttcagggccattttaaa 693
            |||||||||||||||||||||||||||||||||||||
Sbjct: 553  gcgaaatattcatacagtatttcagggccattttaaa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |