BAC Information

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BAC

Clone NameMSMg01-547O01
Chromosome17 (Build37)
Map Location 15,651,969 - 15,652,632
singlet/doubletsinglet
Overlap geneTbp
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1
Downstream genePdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547O01.T7 (MSMg01no547_o01.b1)MSMg01-547O01.TJ (MSMg01no547_o01.g1)
ACCAG612359AG612360
length753758
length of high quality
(start - end)		661 (35 - 695)664 (61 - 724)
definitionCHROMAT_FILE: MSMg01no547_o01.b1 PHD_FILE: MSMg01no547_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:37 2005CHROMAT_FILE: MSMg01no547_o01.g1 PHD_FILE: MSMg01no547_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTCT
AATGCAGAAGTTTGAGTTAGAAAGACACAAACCTTTGATCCAGATCTTAA
GACTGGAAGACACAGGCCTTTAATTGGGATGTTGAGGTGGGAAGACATGT
GATATGCCTTGAATCCAAATCTTGTAGAGGGAAGACATATCTTTAATGTA
CATGATATATATATATTTTTTTTTTTTTGCTGGAAGTCTATGTAAGGACA
TAGAAGAAGGATGCTTTTGCTCTTTGCTTGCTTGCTCTCACCTTGCTAGA
ACATCCATTCCCTCATTGGCATTGGAGTCAACTTCTTTGGGATTCTAGCA
TATACAGAAGACCAGCTGAGACACCCAGGCTTGTGGGGACTGAACAACTA
CTAGATTCTTGAAATTTCCATTCCCAGCCAGCCATTGTTAGATTAGCTGG
ATTGCAGCCTATAAGTCATTCCAATAAATTTATATATGCACATAAATTAT
ATATATGTATATTTACATATGTATACATATATATGTATGCATCTATCTAT
ACACACAAATATATATAAAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAG
AGAAATTAATTTATTCTATAAGTTCTGTGACTCTAGAGTAACCTGACTAC
TAATACAACTATAGACTTTTAGAACTGTTTACCCTGTCAGGAAAATATTT
TGTTCACAGAATAGACCTGTTGACATGAAAAGTAGTATGTCATAGGAGAA
CTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACTCATGTTGTCTTCCTCATATAGACCTGTCCTGAGTTTA
TCTCTGGATCACTCACAAGAAAGGCAGATCCTTTTGTAGACTGAACTAAG
AAACCTGAAATCGCTGTGTTAGAGTATGTTAACTAATGTCCGTTCGAATA
GATGGTATGACCAGGGAGTCGGTTCATGGCCAAGCTCATGTCTGGTTTCT
CACTCTGGTTAAGGCACCTGTTAGAAAAGCAGGCATCTCCAGGAGAGTTC
TGTTCAGGAAGGTGAGATGATTACAGGGCTGACTGCCACTCTTAGCTTAG
GAGTGAATGGTGAGATTGTGATAAGGTGCTATAACTAGACTAGCTTTAAC
TGCATCTAAATAAGGCTCAGACCGTGTGTATACAACTCTTGTTTTTATCA
CAGAACCTCTAGAGTCTGAAGATAGCATTAAGTGATAGGAGGACATGTAG
CTAGTAGTTGGTGGCTATGTCCATGACTCACGGCTCCTGGCTGGTTTCTT
CCTGTGTGTCCTACTTGTGACACCTGGATTCTTTACTCAGGACTTTCTGG
CACAAAGCCTCTTGTATTCAGAAACACAAAGAACTGGTGATTTCTAAACT
GTATTCCCATTTTCTTTCTAGCTATGAGCCAGAATTATTTCCTGGATTAA
TCTACAGAATGATCAAACCCAGAATTGTTCTCCTTATTTTTGTTTCTGGA
AAAGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_o01.g1 MSMg01no547_o01.g1 CHROMAT_FILE:
MSMg01no547_o01.g1 PHD_FILE: MSMg01no547_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:37 2005
         (664 letters)



>mm_chr17_15651769_15652832
          Length = 1064

 Score = 1261 bits (652), Expect = 0.0
 Identities = 661/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatgttgtcttcctcatatagacctgtcctgagtttatctctggatcactcacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcatgttgtcttcctcatatagacctgtcctgagtttatctctggatcactcacaaga 260

                                                                       
Query: 61  aaggcagatccttttgtagactgaactaagaaacctgaaatcgctgtgttagagtatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcagatccttttgtagactgaactaagaaacctgaaatcgctgtgttagagtatgtt 320

                                                                       
Query: 121 aactaatgtccgttcgaatagatggtatgaccagggagtcggttcatggccaagctcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaatgtccgttcgaatagatggtatgaccagggagtcggttcatggccaagctcatg 380

                                                                       
Query: 181 tctggtttctcactctggttaaggcacctgttagaaaagcaggcatctccaggagagttc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggtttctcactctagttaaggcacctgttagaaaagcaggcatctccaggagagttc 440

                                                                       
Query: 241 tgttcaggaaggtgagatgattacagggctgactgccactcttagcttaggagtgaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttcaggaaggtgagatgattacagggctgactgccactcttagcttaggagtgaatgg 500

                                                                       
Query: 301 tgagattgtgataaggtgctataactagactagctttaactgcatctaaataaggctcag 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagattttgataaggtgctataactagactagctttaactgcatctaaataaggctcag 560

                                                                       
Query: 361 accgtgtgtatacaactcttgtttttatcacagaacctctagagtctgaagatagcatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accgtgtgtatacaactcttgtttttatcacagaacctctagagtctgaagatagcatta 620

                                                                       
Query: 421 agtgataggaggacatgtagctagtagttggtggctatgtccatgactcacggctcctgg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 agtgataggaggacatgtagctagtagttggtggctatgtccatgactcatggctcctgg 680

                                                                       
Query: 481 ctggtttcttcctgtgtgtcctacttgtgacacctggattctttactcaggactttctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtttcttcctgtgtgtcctacttgtgacacctggattctttactcaggactttctgg 740

                                                                       
Query: 541 cacaaagcctcttgtattcagaaacacaaagaactggtgatttctaaactgtattcccat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacaaagcctcttgtattcagaaacacaaagaactggtgatttctaaactgtattcccat 800

                                                                       
Query: 601 tttctttctagctatgagccagaattatttcctggattaatctacagaatgatcaaaccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttctttctagctatgagccagaattatttcctggattaatctacagaatgatcaaaccc 860

               
Query: 661 agaa 664
           ||||
Sbjct: 861 agaa 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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