Query= MSMg01no548_m08.b1 MSMg01no548_m08.b1 CHROMAT_FILE:
MSMg01no548_m08.b1 PHD_FILE: MSMg01no548_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:47 2005
(507 letters)
>mm_chr17_55233685_55234591
Length = 907
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Plus
Query: 5 gaattcattaggttttacagcagatatagattcctagctgttagtcatgattagttgctt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaggttttaaagcagatatagattcctagctgttagtcatgattagttgctt 264
Query: 65 aaaagggtgtgggggtaattagtacctcattagcaccactcttttttgttaaaatactaa 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagggtgtgggggtaattagtacctcattagcaccactcttttttgttaaaatactaa 324
Query: 125 caagcactactgatacagcataatatgaccactaatgctctgaaaagactaagtcatgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caagcactactgatacagcataatatgaccactaatgctctgaaaagactaagtcatgct 384
Query: 185 agtaaattacattaattttttaacttgtcatttcatgcataaattattgagctagagatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaaattacattaattttttaacttgtcatttcatgcataaattattgagctagagatt 444
Query: 245 ttgtcagtatcttttctgtgtatataaagcaaagaatacatagaaaggtgctgtatcctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtcagtatcttttctgtgtatataaagcaaagaatacatagaaaggtgctgtatcctt 504
Query: 305 agctctaatcaacaagaaacttgtcagctctttcttctcggacacttaagtgtatataca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctctaatcaacaagaaacttgtcagctctttcttctcggacacttaagtgtatataca 564
Query: 365 aaagaatgctctcaaagaaactctgcgtggggtggcaatatcttttgagagtacaagggg 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 aaagaatgctctcaaagaaactctgcgtggggtggcaatctcttttgagagtacaagggg 624
Query: 425 atgtttgtatgatgtgatgcaaaaaggcttctgctgcagttataagtatcaattttgaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtttgtatgatgtgatgcaaaaaggcttctgctgcagttataagtatcaattttgaca 684
Query: 485 gtacaacagacagctttctgaga 507
|||||||||||||||||||||||
Sbjct: 685 gtacaacagacagctttctgaga 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_m08.g1 MSMg01no548_m08.g1 CHROMAT_FILE:
MSMg01no548_m08.g1 PHD_FILE: MSMg01no548_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:47 2005
(481 letters)
>mm_chr17_55309364_55310247
Length = 884
Score = 890 bits (460), Expect = 0.0
Identities = 477/484 (98%), Gaps = 3/484 (0%)
Strand = Plus / Minus
Query: 1 cagataaaaccagagacactgaaatttatagaggagaaagtggggaaaagcctcgaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagataaaaccagagacactgaaatttatagaggagaaagtggggaaaagcctcgaagat 742
Query: 61 atgggcactggggaaaaattcctaaacagaacagcaatggcttgtgctataagctggcct 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 atgggcactggggaaaaatttctaaacagaacagcaatggcttgtgctataagctgtcct 682
Query: 121 ctccaggcacatacatatgatatacattcacacagacacacatgtgcacacatagtaaag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ctccaggcacatacatatgatatacattcacacagacacacacgtgcacacatagtaaag 622
Query: 181 taaaataagccttgacacagaagcaccagaacatggttgggcatacaagtcaagagccac 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaataaaccttgacacagaagcaccagaacatggttgggcatacaagtcaagagccac 562
Query: 241 accctggttccttatgctt---ctcctgcctccactctgggatcaaccactgtagatgtc 297
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accctggttccttatgcttctcctcctgcctccactctgggatcaaccactgtagatgtc 502
Query: 298 agctagtttctggaatattccaaaattgagttgtatgtttgagtatttgtgcttgctctc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctagtttctggaatattccaaaattgagttgtatgtttgagtatttgtgcttgctctc 442
Query: 358 tttagcactcttttctatgtgcctggccctttctctgcttttggcctctacagtattatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagcactcttttctatgtgcctggccctttctctgcttttggcctctacagtattatt 382
Query: 418 ttccctggagactgtctttctggacagtcaatcaaagccatctgctttacaacaccataa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctggagactgtctttctggacagtcaatcaaagccatctgctttacaacaccataa 322
Query: 478 tcag 481
||||
Sbjct: 321 tcag 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 884
Length adjustment: 10
Effective length of query: 471
Effective length of database: 874
Effective search space: 411654
Effective search space used: 411654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
