BAC Information

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BAC

Clone NameB6Ng01-001C08
Chromosome3 (Build37)18 (Build37)
Map Location 41,059,192 - 41,059,7377,855,767 - 7,856,801
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C08.bB6Ng01-001C08.g
ACCDH839549DH839550
length9921,024
definitionDH839549|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C08, 5' end.DH839550|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,192 - 41,059,737)(7,855,767 - 7,856,801)
sequence
gaattctttgtccagctctgagccccattttttaatggggttatttgatt
ttctagagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagaatcttttgccttgcagaagctttgcaacttta
tgaggtcccatttattgattctcaatcttaaagcacaagccattgctgtt
ctattcaggattttttcccctctacccatatctttgagtcttttccctac
tttcttctctataagtttcactgtccttggttttatgtggagttccttga
tccacttaaatttgaccttagtacaaggagataggaatgtatcaattcaa
attcttctgtatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctctctggtcaacgatcaagt
gaccataggtgtgtggcttcatttctgagtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgcagtttttttgtttgtgtg
tttttttatcacaattgctctatagtacaggaatggtgattccaccagag
gttcttttatccttgagaagagtttttgctatcctaggtttttttgttat
tccagatgaatttgcagattgccctttctgattcgttgaaaaattgaatt
ggaattttgatggggattgcattgaatctgtagattgcttttggcaagat
agccatttttactatattgatcctgacaatccatgagcatggaagatctt
tccatcttcagagatcttctttaatttctttcttcagagacttgaagttc
ttatcatacagatctttcacttccttagttagagtcacgccaagttatta
atattatttgtgactattgtgaaggtgttgattccctaattt
gaattctctgtgagttcaaggacagccgggtctacttagcaaattacagt
accttaaaaactacataatgagatcttgcctcaaaaaaacaataaccaca
cacacacacacacacacaccaaaaaaaaaaaaaaaaacccacaaacatta
aaaaaaacatacaggctgaaatacacctttccattccaagatcttttggt
catgctgtctatcttagcagtagtaagaaaactaaggcattactcaattc
aatcttaagagttaatgcattctattattttatagaattagatattttaa
tagctaatgctatacatatacatatatatttgaagttatcaaataaaatt
tgtttataaaaatattggatttaagaatcttgatattccgtgccgggcgt
ggtggcacacgcctttaatcccagcactcgggaggtagaggcaggcggat
ttctgagtttgaggccagcctggtctacaaagtgagttccaggacagcca
gggctatagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaa
aaaaaaaaagaaagaaaatattaagaatctcgatattcattaagtcatga
gattcaatatcgatgttttacagatggtgaggtagcttagcagataaaag
cgtgtcctgtgcaagcctgagatccctgaattctatcaccagaagcacag
gggaagggacgagagagatctctcccagaatatgttctctgacctacaca
catcctcagtggcattcttatactccactcacatacagagcataacaata
ataatcatttctgaaaaaatatatatctgtcttagaaaatgttcttggtg
ttgcatgtgatacagtgctatatgaataggtttctgacatactcaatatg
atagatgttgtaggatatgatttttataaattttcaaatatgctttttta
actacataagacacatatataggtctggtctgcagccagtgtttcacaga
gactctattagcctagacaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059192_41059737
seq2: B6Ng01-001C08.b_45_591 (reverse)

seq1  AATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCAC  50
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACTCAGAAATGAAGCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  100
      |||||| | ||| || ||||||||||||||||||||||||||||||||||
seq2  TTGATCGTTGACCAGAGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  100

seq1  TTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150
      ||||||||||||||||||||||||||||  ||||||||  ||||||||  
seq2  TTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCATACAGAAGAATTT  150

seq1  GAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      |||||||| || ||||||||||||||||||||||||||| ||||||||||
seq2  GAATTGATACATTCCTATCTCCTTGTACTAAGGTCAAATTTAAGTGGATC  200

seq1  AAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||| |||||||||||||  |||| |||||||||||||| |||||||
seq2  AAGGAACTCCACATAAAACCAAGGACAGTGAAACTTATAGAGAAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAA  300
       |||||||| ||  |||||||||  | |||||||||| ||||| ||||||
seq2  AGGGAAAAGACTCAAAGATATGGGTAGAGGGGAAAAAATCCTGAATAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  350
      ||||||||||||||||| |||||||||||||  | |||||||||||||| 
seq2  CAGCAATGGCTTGTGCTTTAAGATTGAGAATCAATAAATGGGACCTCATA  350

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||  |||||||||||||||||||||||||  | |||||||||||||||||
seq2  AAGTTGCAAAGCTTCTGCAAGGCAAAAGATTCTGTCAATAAGACAAAAAG  400

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  449
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  499
      |||||||||||||||||||| ||||||||||||||||||| || ||||||
seq2  GACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCTAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  546
      |||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGGACAAAGAATT  547

seq1: chr18_7855767_7856801
seq2: B6Ng01-001C08.g_67_1090 (reverse)

seq1  TTTATTGTCTAGGCTAAATAGAGTCTCTGTTGAAAACACTGGCTGCAGAC  50
      ||||||||||||||| ||||||||||||||   |||||||||||||||||
seq2  TTTATTGTCTAGGCT-AATAGAGTCTCTGT--GAAACACTGGCTGCAGAC  47

seq1  CAGACCTATAATATTTGTGTATTTATGTAGTTTAAAAAAAAGCATATTTG  100
      |||||||   |||| |||||  ||||||||||   |||||||||||||||
seq2  CAGACCT---ATATATGTGT-CTTATGTAGTT---AAAAAAGCATATTTG  90

seq1  AAAATTTATAAAATATCATATCCTACAACATTCTATCATATTGAGTATGT  150
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  AAAATTTATAAAA-ATCATATCCTACAACA-TCTATCATATTGAGTATGT  138

seq1  CAGAAACCTATTCATATAGCACTGTATCACATGCAACA-CAAGAACATTT  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGAAACCTATTCATATAGCACTGTATCACATGCAACACCAAGAACATTT  188

seq1  TCTAAGACAGATATATATTTTTTCAGAAATGATTATTATTGTTATGCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACAGATATATATTTTTTCAGAAATGATTATTATTGTTATGCTCT  238

seq1  GTATGTGAGTGGAGTATAAGAATGCCACTGAGGATGTGTGAAGGTCAGAG  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTATGTGAGTGGAGTATAAGAATGCCACTGAGGATGTGTGTAGGTCAGAG  288

seq1  AACATATTCTGGGAGAGATCTCTCTCGTCCCTTCCCCTGTGCTTCTGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTCTGGGAGAGATCTCTCTCGTCCCTTCCCCTGTGCTTCTGGTG  338

seq1  ATAGAATTCAGGGATCTCAGGCTTGCACAGGACACGCTTTTATCTGCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTCAGGGATCTCAGGCTTGCACAGGACACGCTTTTATCTGCTAA  388

seq1  GCTACCTCACCATCTGTAAAACATCGATATTGAATCTCATGACTTAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCACCATCTGTAAAACATCGATATTGAATCTCATGACTTAATGA  438

seq1  ATATCGAGATTCTTAATATTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGAGATTCTTAATATTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTT  488

seq1  TTTTTGGTTTTTCGAGACAGGGTTTCTCTATAGCCCTGGCTGTCCTGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTCGAGACAGGGTTTCTCTATAGCCCTGGCTGTCCTGGAA  538

seq1  CTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCT  588

seq1  ACCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCACGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCACGGA  638

seq1  ATATCAAGATTCTTAAATCCAATATTTTTATAAACAAATTTTATTTGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGATTCTTAAATCCAATATTTTTATAAACAAATTTTATTTGATA  688

seq1  ACTTCAAATATATATGTATATGTATAGCATTAGCTATTAAAATATCTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATATATATGTATATGTATAGCATTAGCTATTAAAATATCTAAT  738

seq1  TCTATAAAATAATAGAATGCATTAACTCTTAAGATTGAATTGAGTAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAATAATAGAATGCATTAACTCTTAAGATTGAATTGAGTAATGC  788

seq1  CTTAGTTTTCTTACTACTGCTAAGATAGACAGCATGACCAAAAGATCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTCTTACTACTGCTAAGATAGACAGCATGACCAAAAGATCTTG  838

seq1  GAATGGAAAGGTGTATTTCAGCCTGTATGTTTTTTTTAATGTTTGTGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAAGGTGTATTTCAGCCTGTATGTTTTTTTTAATGTTTGTGGGT  888

seq1  TTTTTTTTTTTTTTTTGGTGTGTGTGTGTGTGTGTGTGTGGTTATTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGGTGTGTGTGTGTGTGTGTGTGTGGTTATTGTTT  938

seq1  TTTTGAGGCAAGATCTCATTATGTAGTTTTTAAGGTACTGTAATTTGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGCAAGATCTCATTATGTAGTTTTTAAGGTACTGTAATTTGCTA  988

seq1  AGTAGACCCGGCTGTCCTTGAACTCACAGAGAATTC  1035
      ||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCCGGCTGTCCTTGAACTCACAGAGAATTC  1024