BAC Information

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BAC

Clone NameB6Ng01-001I17
Chromosome18 (Build37)
Map Location 49,079,953 - 49,081,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001I17.bB6Ng01-001I17.g
ACCDH839835DH839836
length1,1391,225
definitionDH839835|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I17, 5' end.DH839836|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatggtctatgtcaacaacactcagtattatcaataattttaac
ctcataatgttttataaatcattttcaaggcaagcataattaactgcatt
acaaaaacttatgtaaacttcaaaaaactggggttttttttgaacggatg
aaatcatatattgcctgaagaaaaagactatcgtaaacatcagaaaactt
tttaacaagtaatgtttccatatataatatttgctttgttattaataatt
tatttaaatattaatgtgccctctagttaatatgtatccctcagttatca
cctcagacatcattgcatcttaagagagctctgtgtttatccaactaggt
agtccctcgcttccttgtctatagcctgtttattcattacctctatttat
cagaaatggctaggattctcaaagtgcagtccatggtcaagaattatgat
tttcaccttggcatgtgttaggaaactatgtcttcaggatcaactccaga
cacactatatcagaatcaatgttcatgcatcttgggaagctcctggttaa
caaaccttccaagtaactgttacaagctacctgaagagtctggggcccct
gtgtttactgtagaagttaagctgagtaatgaaaggaaactgtataattt
gtggttttagcccagaatctgaatatcatgtctcacataaattacctgtt
tctcaaagtgtcatgcttacagagatacagcctgcaatagtgaaaatgaa
gccaaatcccactgtgtccttgttgtttcatgttttaagcattgcagatt
tactaatttctgaatacacactatattctcatggggacaatttggagcct
cctttagtacagatgaaggatgagggccagaaatactgggaaccaaatgg
tcagtgatcagcagaaccaaaggctattcttctgagagattcagagtgta
gcctttataaccatgaaatcacatagacttaggatgcatgaataatcaga
aataacaataggataatacatcctactcagctattagtatgtattggtgc
atatgtaaatataatggcaagtatgacattttggcctacaaagtatgttt
gtatatgagccattgacaaatgacttttaatattctcat
gaattcatattcagaaactgtagactgtacacagcagtaggacagagatc
agccatgtctcgtgtataattttcttggtgagattaaagaaaccagtaga
atgtggcatggtaataatgtggattattgtacagatgatttaggatagga
gaatagattgcaatgaaaaagaatataagatacaaattgtaattagtgta
catcaattgtacaaaaataacaggtttcactgtaacaccttctcacatga
atccagtgtatcttgagcatttccaactctttattcctttcacttgccct
ctccccccagcaaatagttccagttctattttcatgcttaaaaatggatc
ctgcaaataagagaaaaccccattcttgcctttctaagtttttcttttgt
ttttcagcgtgatgatctctagctacatagactttacctgaaaacaaaat
ggtgtcatcactcctaatcactaaataatactccaccttatatgggcaca
tttcttttttatctatacgagggggctagagtgagccatgatttgcctgt
tatgaagagtgggtttcttaatgtataataaacacaagtgagcaggtatc
tctcttgtaaattgagttgagtttatttgggaatatacccatgtgtcata
ttcttttctgaggcacctccaaaggaactacattcttgccagttcttatt
agtgtctcttcttatttttattatttttattaggtattttcttcatttac
atttccaatgctattccaaaagtcccccataccctgccccctcccactcc
cctacctacccactcccacttcttggccctggcattcccctgtactgagg
catataaagtttgcaagaccaatgggcctctctttccgttgatggccgac
taggccatctgataaatatgcagctagagaaccagctcctggggtactgg
ttagttatattgttgttcacctaaagggtaggacccctttagctcatgga
tactctctctagctcctccattgggccctgcgatcatccatactgaactg
gtgtcctccacttccgttttggctaggcctcggcccggcctctctgagaa
cgctatgctcagactcgtttatccagactgctaggtatgccaggttgcag
cgatggagggcatcagagaggatcagaatgactgtcacttaggcgatctc
tcctcattgctacacatgcatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49079953_49081102
seq2: B6Ng01-001I17.b_42_1180

seq1  GAATTCAATGGTCTATGTCAACAACACTCAGTATTATCAATAATTTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTCTATGTCAACAACACTCAGTATTATCAATAATTTTAAC  50

seq1  CTCATAATGTTTTATAAATCATTTTCAAGGCAAGCATAATTAACTGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATGTTTTATAAATCATTTTCAAGGCAAGCATAATTAACTGCATT  100

seq1  ACAAAAACTTATGTAAACTTCAAAAAACTGGGGTTTTTTTTGAACGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTTATGTAAACTTCAAAAAACTGGGGTTTTTTTTGAACGGATG  150

seq1  AAATCATATATTGCCTGAAGAAAAAGACTATCGTAAACATCAGAAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATATTGCCTGAAGAAAAAGACTATCGTAAACATCAGAAAACTT  200

seq1  TTTAACAAGTAATGTTTCCATATATAATATTTGCTTTGTTATTAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAGTAATGTTTCCATATATAATATTTGCTTTGTTATTAATAATT  250

seq1  TATTTAAATATTAATGTGCCCTCTAGTTAATATGTATCCCTCAGTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATATTAATGTGCCCTCTAGTTAATATGTATCCCTCAGTTATCA  300

seq1  CCTCAGACATCATTGCATCTTAAGAGAGCTCTGTGTTTATCCAACTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACATCATTGCATCTTAAGAGAGCTCTGTGTTTATCCAACTAGGT  350

seq1  AGTCCCTCGCTTCCTTGTCTATAGCCTGTTTATTCATTACCTCTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCGCTTCCTTGTCTATAGCCTGTTTATTCATTACCTCTATTTAT  400

seq1  CAGAAATGGCTAGGATTCTCAAAGTGCAGTCCATGGTCAAGAATTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGCTAGGATTCTCAAAGTGCAGTCCATGGTCAAGAATTATGAT  450

seq1  TTTCACCTTGGCATGTGTTAGGAAACTATGTCTTCAGGATCAACTCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTTGGCATGTGTTAGGAAACTATGTCTTCAGGATCAACTCCAGA  500

seq1  CACACTATATCAGAATCAATGTTCATGCATCTTGGGAAGCTCCTGGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATATCAGAATCAATGTTCATGCATCTTGGGAAGCTCCTGGTTAA  550

seq1  CAAACCTTCCAAGTAACTGTTACAAGCTACCTGAAGAGTCTGGGGCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTCCAAGTAACTGTTACAAGCTACCTGAAGAGTCTGGGGCCCCT  600

seq1  GTGTTTACTGTAGAAGTTAAGCTGAGTAATGAAAGGAAACTGTATAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACTGTAGAAGTTAAGCTGAGTAATGAAAGGAAACTGTATAATTT  650

seq1  GTGGTTTTAGCCCAGAATCTGAATATCATGTCTCACATAAATTACCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTAGCCCAGAATCTGAATATCATGTCTCACATAAATTACCTGTT  700

seq1  TCTCAAAGTGTCATGCTTACAGAGATACAGCCTGCAATAGTGAAAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTGTCATGCTTACAGAGATACAGCCTGCAATAGTGAAAATGAA  750

seq1  GCCAAATCCCACTGTGTCCTTGTTGTTTCATGTTTTAAGCATTGCAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCCCACTGTGTCCTTGTTGTTTCATGTTTTAAGCATTGCAGATT  800

seq1  TACTAATTTCTGAATACACACTATATTCTCATGGGGACAATTTGGAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTTCTGAATACACACTATATTCTCATGGGGACAATTTGGAGCCT  850

seq1  CCTTTAGTACAGATGAAGGATGAGGGCCAGAAATACTGGGAACCAAAATG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTTTAGTACAGATGAAGGATGAGGGCCAGAAATACTGGGAACC-AAATG  899

seq1  GTCAGTGATCAGCAGAACCAAAGGCTATTCTTCTGAGAAGATTCAGAGTG  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCAGTGATCAGCAGAACCAAAGGCTATTCTTCTGAG-AGATTCAGAGTG  948

seq1  TAGCCTTTATAACCATGAAATCACATAGACTTAGGATGCATGGAAATAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TAGCCTTTATAACCATGAAATCACATAGACTTAGGATGCATG--AATAAT  996

seq1  CAGAAATAACAAATTAAGATAATACATCCTACTCAGCTATTAGTATGTAT  1050
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  CAGAAATAACAA--TAGGATAATACATCCTACTCAGCTATTAGTATGTAT  1044

seq1  TGTGCCATATGTAAAATAT-ATGGCAAAGTAATGACATTTTGGCCCTACA  1099
      ||   ||||||| |||||| ||||| |||| |||||||||||| ||||||
seq2  TGGTGCATATGT-AAATATAATGGC-AAGT-ATGACATTTTGG-CCTACA  1090

seq1  AAGTATG-TTGTATATGAAGCCCCATTGACAATGGTCTTCTAATATTCTC  1148
      ||||||| ||||||||||    ||||||||||  | ||| ||||||||||
seq2  AAGTATGTTTGTATATGA---GCCATTGACAAATGACTTTTAATATTCTC  1137

seq1  AT  1150
      ||
seq2  AT  1139