BAC Information

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BAC

Clone NameB6Ng01-001L08
Chromosome18 (Build37)
Map Location 87,510,821 - 87,511,912
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L08.bB6Ng01-001L08.g
ACCDH839950DH839951
length1,2361,077
definitionDH839950|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L08, 5' end.DH839951|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgacttctttatatatattggatattagtcctc
tatcggatttaggataggtaaagatcctttcccaatctgatggtggtctt
tttgtcttattgacagtgtcttttgccttgcagaagctttgcagtttcat
gaggtcccatatgtaaatcctcaatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataaatttcagtgtctctggttttatgtgaagttccttgat
ccaattagatttgaccttactacaaggagataggaatggatcaattcaca
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtttttcttccactggatggttttagctcccttgtccaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tttacttgtctgtcaccttaatcatcagggaaatgcaaatcaaaacaacc
ctgagattccacctcacaccagtcagaatggctaagatcaaaaattcagg
tgacagcagatgctggcgaggatgtggagaaagaggaacactcctccatt
gttggtgggattgcaagcttatacaaccactctggaaatcagtctggcgg
ttcctcagaaaattggacatagtactacaggaagatccagcaatacctct
cctgggcatatatccagaagatgtcccaaccggtaagaaggacacatgct
ccactatgttcacagcagccttatttataatagccagaacctggaaagaa
cccagatgccactaaacagaggaatggatacaaaaatgtggtacatttac
acatggagtactactcagctattaaaagaatgatttatgaaattcctagg
caaatgtggactgaggcatcatctgattgagttacacatcacaaagactc
aatatatgtactcactggatagtgaaatagccagaactagtataagtgtg
agaatttagttacattgcaaacatgaaaactgaagaacgaagacaaggtg
tgacctttgcccttttctgagtgaacatagccatggaggattcagagaac
aagttgtgaacgtgagacaaagatggtgacagtcga
gaattctctgctcctccagcatcatgtgacattaataagcaattgaataa
gcaattgaattttttttcagcaatgaagagggtgaaattttgctgtttgt
aggaaaatagatgcaactggaaacaatcacaagaaacaaagacatcttcg
taataaatattcataataaagagaacaattttatgttttgtctcacttaa
agatttacacacacacacacacacacacagagagagagagaaatagaaag
agagagagagagagagagagagagagagagagagagagagagagagagag
agaaatgagtagaaaaagataaatggttacagaaatttaggggggaatag
cctcagcatatgttacatatttgtggggatattttattcatttctttaaa
ctcacactgatcacgttggctttgtttaaatgatgaagaaattgttcaac
atatttacatcaatgaatggatatttcttaggaagaatcatgttgctaag
gccatgttttctgtctcaatagactcacaagagaaattgtaggtttcttc
tttgttgattgtcaaacttgagttttccaacatgactaaaccacatctcc
tgcatcaatatacaataggtatggaaatgtaaaacatgcatatacatgca
gattgttagaataacaaagtagaattattactttaggtttatacagtaaa
taatacttaatttttaaaaataatagcccagacttttattttatttaact
cacatttcataagtaacatttatattacagggaatgcactaaatatatta
acatatgaatggacatggcctaagataatgatttaaagattaaagtcatt
gcatagatttgctatctaataacaatattttaaattaacatttctacaat
tgacatgctctgtagagcatgttttgagttaaccttttcctaaagatgat
gagtttctactagaaagctgagctattgaaaacacttttaatatttcaat
actgtaaagtaataaactttcttattatttgattttttttacttatcact
tcgtcacccctcctattctttcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87510821_87511912
seq2: B6Ng01-001L08.g_68_1144

seq1  GAATTCTCTGCTCCTCCAGCATCATGTGACATTAATAAGCAATTGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTCCTCCAGCATCATGTGACATTAATAAGCAATTGAATAA  50

seq1  GCAATTGAATTTTTTTTCAGCAATGAAGAGGGTGAAATTTTGCTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGAATTTTTTTTCAGCAATGAAGAGGGTGAAATTTTGCTGTTTGT  100

seq1  AGGAAAATAGATGCAACTGGAAACAATCACAAGAAACAAAGACATCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAGATGCAACTGGAAACAATCACAAGAAACAAAGACATCTTCG  150

seq1  TAATAAATATTCATAATAAAGAGAACAATTTTATGTTTTGTCTCACTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATATTCATAATAAAGAGAACAATTTTATGTTTTGTCTCACTTAA  200

seq1  AGATTTACACACACACACACACACACACAGAGAGAGAGAGAAATAGAA--  248
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AGATTTACACACACACACACACACACACAGAGAGAGAGAGAAATAGAAAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  300

seq1  AGAAATGAGTAGAAAAAGATAAATGGTTACAGAAATTTAGGGGGGAATAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGTAGAAAAAGATAAATGGTTACAGAAATTTAGGGGGGAATAG  350

seq1  CCTCAGCATATGTTACATATTTGTGGGGATATTTTATTCATTTCTTTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCATATGTTACATATTTGTGGGGATATTTTATTCATTTCTTTAAA  400

seq1  CTCACACTGATCACGTTGGCTTTGTTTAAATGATGAAGAAATTGTTCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTGATCACGTTGGCTTTGTTTAAATGATGAAGAAATTGTTCAAC  450

seq1  ATATTTACATCAATGAATGGATATTTCTTAGGAAGAATCATGTTGCTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACATCAATGAATGGATATTTCTTAGGAAGAATCATGTTGCTAAG  500

seq1  GCCATGTTTTCTGTCTCAATAGACTCACAAGAGAAATTGTAGGTTTCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTTTCTGTCTCAATAGACTCACAAGAGAAATTGTAGGTTTCTTC  550

seq1  TTTGTTGATTGTCAAACTTGAGTTTTCCAACATGACTAAACCACATCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATTGTCAAACTTGAGTTTTCCAACATGACTAAACCACATCTCC  600

seq1  TGCATCAATATACAATAGGTATGGAAATGTAAAACATGCATATACATGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATATACAATAGGTATGGAAATGTAAAACATGCATATACATGCA  650

seq1  GATTGTTAGAATAACAAAGTAGAATTATTACTTTAGGTTTATACAGTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTAGAATAACAAAGTAGAATTATTACTTTAGGTTTATACAGTAAA  700

seq1  TAATACTTAATTTTTAAAAATAATAGCCCAGACTTTTATTTTATTTAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTAATTTTTAAAAATAATAGCCCAGACTTTTATTTTATTTAACT  750

seq1  CACATTTCATAAGTAACATTTATATTACAGGGAATGCACTAAATATATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCATAAGTAACATTTATATTACAGGGAATGCACTAAATATATTA  800

seq1  ACATATGAATGGACATGGCCTAAGATAATGATTTAAAGATTAAAGTCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAATGGACATGGCCTAAGATAATGATTTAAAGATTAAAGTCATT  850

seq1  GCATAGATTTGCTATCTAATAACAATATTTTAAATTAACATTTCTACAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATTTGCTATCTAATAACAATATTTTAAATTAACATTTCTACAAT  900

seq1  TGACATGCTCTGTAGAGCATGTTTTGAGTTAACCTTTTCCTAAAGATGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCTCTGTAGAGCATGTTTTGAGTTAACCTTTTCCTAAAGATGAT  950

seq1  GAAGTTTCTACTAAGGAAAAGCTGAGCTAATTGAAAACAACTTTTAATAT  998
      | |||||||||||    ||||||||||| ||||||||| |||||||||||
seq2  G-AGTTTCTACTA---GAAAGCTGAGCT-ATTGAAAAC-ACTTTTAATAT  994

seq1  TTCCATACTGTAAAGTAATAAAACTTTTCTTTAATTTATTTTGATTTTTT  1048
      ||| ||||||||||||||||||   ||||||  |||   ||||| |||||
seq2  TTCAATACTGTAAAGTAATAAA--CTTTCTT--ATT--ATTTGA-TTTTT  1037

seq1  TTTACTTATCACCTTCTGGTCACCCCTCACTATTCTTTCCTCTT  1092
      ||||||||||| ||||  |||||||||| |||||||||||||||
seq2  TTTACTTATCA-CTTC--GTCACCCCTC-CTATTCTTTCCTCTT  1077