BAC Information

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BAC

Clone NameB6Ng01-001M24
Chromosome11 (Build37)18 (Build37)
Map Location 92,366,166 - 92,367,02849,643,686 - 49,644,176
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKif2b
Downstream geneLOC382545, LOC100039286, Car10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M24.bB6Ng01-001M24.g
ACCDH840027DH840028
length8631,158
definitionDH840027|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M24, 5' end.DH840028|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,366,166 - 92,367,028)(49,643,686 - 49,644,176)
sequence
gaattcatgagactgttttctactgcaacataaggagatcatctcatgac
tttaaagccatttgttgttgctatcattaaaataggccattattctttct
ttttttttttaactttacagtttaatagatctcctgagacttttctcaat
tagccattacatcactagtttagacatttctaaatatgtttgctaaacaa
atctgagaatggcagaaaaatggcattgcctcaggcaaaaacctttccct
tcgtggtgatgttctcttatttaaatcagtggctttttgcttaaatgcta
ttcttttttatctttttaatggtgtagagaaagattttagaaatatgttg
agcagggttggagacatgactcagtgggtaagtgtttgctgtgaaacatg
aggacctaaattctgattcccagctcaaacttaagaagctgtgtgcgtgg
ccatacacaatccctgttctcttggtactgttgaagctccggtcactgat
ggagcttcctggacatcagcttagctctccaggttcagtgggacattctt
tctcaaagatataagttggcaagtgatacagaaagaaatctaatttcctc
ctcttgtttctatacacacacacacacacacacacacacagagagagaga
gagagagagagagagagagacagacagagacagagagagacagagagaca
gagagacagagagagagagagagagagagagagagagagagagagagaga
gagaaacagacagataggcagacagatacagacagagattaaaagcactg
taaaaggctataatacaaaaagaaacttgtgtatgtatgtatgtgtgtgt
gtgtgtgtgtgtg
gaattcactttgtagaccaggctgacctcgaactcagaaatttgcctgcc
tctgactcacaagtgttgagattaaaggcatccgacaccaccgcccggct
tttttattattttgtaaattaatttatttttcacactctatattttattt
tcctcatccaccctctggctgttccacattccatacctcctccccacacc
cctgtctctacatgaatgtccccactctgcacccaacctgacctataaac
tccctggggcctccagtctcttgagggttaggtgcatcatctctgaatga
acacagacctggaagtcctctactgtatgtgtgttggggacctcagatca
tctggtctatgctgtgtgtttggtggtccactgtttgagagatcttgagg
gttcagattgagactgctgctcctcctacatgattgcccttctcctcagc
ttctttcactcttccctaatttaacaactggcatcagctgcttctgtcaa
ttagtggggtgcaaatatctgcatctgactctttcagctacttgttgggt
ctttcaaaggtcagtcatgatagttcccttttttgtgagtgctccatagc
ctcagtagtagtgtcaggccttgggacctctccttgagctggatacctct
ttgggcctatcactgggccttctttcctcatgctcctctacattttcttc
attttatttttcctttccttttcttttcttttttttttttttcaagacag
ggtctgtatagccctggctgtcctggaacttactttgtagaccaggatgg
tctcgaatccagaaatacgtcctgttttctgcctcccgagtgctggatta
aaggcatgcgccaccacacctggcttcctctccattttcattcctgtaat
tttttcagacaggaacaattatgggtcagagttgtgattttaggatggca
acctcatccctcgcttgtgtcctgtcttgtggctttagtgggctctataa
gttccctctatctactgtcaggcatttcatctaagtccttcctttgagtc
tgaagtctcttacctccagtctttggatgcattctgaaggggacgacgcc
acccaactggcatcaacagttgaacatgaagaccctctgcttcagacatg
gaaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_92366166_92367028
seq2: B6Ng01-001M24.b_46_908

seq1  GAATTCATGAGACTGTTTTCTACTGCAACATAAGGAGATCATCTCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGACTGTTTTCTACTGCAACATAAGGAGATCATCTCATGAC  50

seq1  TTTAAAGCCATTTGTTGTTGCTATCATTAAAATAGGCCATTATTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCATTTGTTGTTGCTATCATTAAAATAGGCCATTATTCTTTCT  100

seq1  TTTTTTTTTTAACTTTACAGTTTAATAGATCTCCTGAGACTTTTCTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAACTTTACAGTTTAATAGATCTCCTGAGACTTTTCTCAAT  150

seq1  TAGCCATTACATCACTAGTTTAGACATTTCTAAATATGTTTGCTAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTACATCACTAGTTTAGACATTTCTAAATATGTTTGCTAAACAA  200

seq1  ATCTGAGAATGGCAGAAAAATGGCATTGCCTCAGGCAAAAACCTTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAATGGCAGAAAAATGGCATTGCCTCAGGCAAAAACCTTTCCCT  250

seq1  TCGTGGTGATGTTCTCTTATTTAAATCAGTGGCTTTTTGCTTAAATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTGATGTTCTCTTATTTAAATCAGTGGCTTTTTGCTTAAATGCTA  300

seq1  TTCTTTTTTATCTTTTTAATGGTGTAGAGAAAGATTTTAGAAATATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTATCTTTTTAATGGTGTAGAGAAAGATTTTAGAAATATGTTG  350

seq1  AGCAGGGTTGGAGACATGACTCAGTGGGTAAGTGTTTGCTGTGAAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTTGGAGACATGACTCAGTGGGTAAGTGTTTGCTGTGAAACATG  400

seq1  AGGACCTAAATTCTGATTCCCAGCTCAAACTTAAGAAGCTGTGTGCGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTAAATTCTGATTCCCAGCTCAAACTTAAGAAGCTGTGTGCGTGG  450

seq1  CCATACACAATCCCTGTTCTCTTGGTACTGTTGAAGCTCCGGTCACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACAATCCCTGTTCTCTTGGTACTGTTGAAGCTCCGGTCACTGAT  500

seq1  GGAGCTTCCTGGACATCAGCTTAGCTCTCCAGGTTCAGTGGGACATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCCTGGACATCAGCTTAGCTCTCCAGGTTCAGTGGGACATTCTT  550

seq1  TCTCAAAGATATAAGTTGGCAAGTGATACAGAAAGAAATCTAATTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGATATAAGTTGGCAAGTGATACAGAAAGAAATCTAATTTCCTC  600

seq1  CTCTTGTTTCTATACACACACACACACACACACACACACAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTCTATACACACACACACACACACACACACACAGAGAGAGAGA  650

seq1  GAGAGAGAGAGAGAGAGAGACAGACAGAGACAGAGAGAGACAGAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGACAGACAGAGACAGAGAGAGACAGAGAGACA  700

seq1  GAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  750

seq1  GAGAAACAGACAGATAGGCAGACAGATACAGACAGAGATTAAAAGCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGACAGATAGGCAGACAGATACAGACAGAGATTAAAAGCACTG  800

seq1  TAAAAGGCTATAATACAAAAAGAAACTTGTGTATGTATGTATGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCTATAATACAAAAAGAAACTTGTGTATGTATGTATGTGTGTGT  850

seq1  GTGTGTGTGTGTG  863
      |||||||||||||
seq2  GTGTGTGTGTGTG  863

seq1: chr18_49643686_49644176
seq2: B6Ng01-001M24.g_795_1224 (reverse)

seq1  TACATTTCCATGTCTGATCATGGAACCCTACATGCCCCTGAAACTGGTGA  50
      |||||||||||||||||    |     || ||||    |  ||||| |||
seq2  TACATTTCCATGTCTGAAGCAGAGGGTCTTCATG----TTCAACTGTTGA  46

seq1  GCCGAGGTAGCCAAGAATAACATTGGTACTCTCAACATGAATTTTAAATT  100
        | || |      |  |  | | |   |  |||    ||||        
seq2  TGCCAGTT------GGGTGGCGTCGTCCCCTTCA----GAAT--------  78

seq1  TTCACAGGCAACGGCACAAATGCCTCGCTAAAGATGACACATAGTTTAAA  150
             ||| |    |||| | ||       || |  | | | || | |
seq2  -------GCATC----CAAA-GACT------GGAGGTAAGAGACTTCAGA  110

seq1  CACTGGATAGCAA-TACATTTTTTGAT-AACTGTCACATAAT-GGCAGAG  197
      | |   | || ||  ||    || ||| || || |  | | | |  ||||
seq2  CTC---AAAGGAAGGAC----TTAGATGAAATGCCTGACAGTAGATAGAG  153

seq1  ATAACCTTTTTGAATAAATGTTGTGATAAAAATCCAAGAATCATGACAGT  247
        || ||| | ||    |        ||||    |||||  || ||||  
seq2  GGAA-CTTATAGAGCCCA-------CTAAAGCCACAAGA--CAGGACA--  191

seq1  CAGTATAGAACAGGAAGCATG-GGTAGTTCCAT--GGGACTCCAAGGTTT  294
      ||    ||     || | ||| |||  | ||||     | ||  |  | |
seq2  CA----AG----CGAGGGATGAGGT--TGCCATCCTAAAATCACAACTCT  231

seq1  G----AGAAATGGAACAGTACCAAAGAGATACACAAATCCCATTGGTGAC  340
      |    | || ||   | ||   ||| |  ||||  |||   | ||| || 
seq2  GACCCATAATTGTTCCTGTCTGAAAAAATTACAGGAATGAAAATGGAGA-  280

seq1  GCTATCTAAAAATAGAAAC---TGCCTTTTAATCCCAGCAGTAGGGAGGC  387
      |  | | |    | |   |   |||| |||||| |||||| | |||||||
seq2  GGAAGCCAGGTGTGGTGGCGCATGCC-TTTAAT-CCAGCACTCGGGAGGC  328

seq1  AG-AGGCAGG-CGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTG  435
      || |  |||| || |||||||  ||| || ||| ||||||||||||||| 
seq2  AGAAAACAGGACGTATTTCTGGATTCGAGACCATCCTGGTCTACAAAGTA  378

seq1  AGTTCCAGGACAGCCAGGGCTATCCAGAGAAATCCTGTCTCGAAAAAAAC  485
      ||||||||||||||||||||||| |||    | ||||||| |||||||| 
seq2  AGTTCCAGGACAGCCAGGGCTATACAG----ACCCTGTCTTGAAAAAAAA  424

seq1  AAAAAA  491
      ||||||
seq2  AAAAAA  430