BAC Information

Click to search

BAC

Clone NameB6Ng01-001N23
Chromosome18 (Build37)3 (Build37)
Map Location 29,042,004 - 29,043,20999,866,002 - 99,866,031
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001N23.bB6Ng01-001N23.g
ACCDH840071DH840072
length1,181259
definitionDH840071|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N23, 5' end.DH840072|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,042,004 - 29,043,209)(99,866,002 - 99,866,031)
sequence
gaattcatctgaacatttattttccttagtgtgctgctatttttcttttt
atgttttttaacgtagatttagtggcagaatattagcagctgaggataca
ggagctgttgtcaacacgataaggcaaacagctcagctttcagcttttgg
tttctaatccctagatgtcccttgatggtcatgaaaggaagccatatggc
aaatggagaggtaggcttagtgctccctaattggttggaaattagccagt
ctacatgtgagttcaaagaactgtggattgtaaatataacataacaacaa
caaaaaaaaaaaacaaaaaaaaaaaaacaaccaaactcttgctccatcct
taacagtgccatgtgagttttctcctgcatcataacaaattacccaaggt
ttcattgtttaaaccagcagagttttcttgcaattttctatgtaaattgt
tccatgtaagtctcacagggttaaagccaagatgacagccattttgaaac
tcaatggtgtgttctagtgtgagcttgtgagcttccagagtcaacagtat
tccttagcagcttctggcctctttctgctaccttcaaagacagccataga
gcttgagtccacaaaccatttaattaaagacagacatggtgttgacacct
ggtaaaagcgtatcacttagatatctgaagaatagctactagtgcaactg
tgagaccaagccaagagcaattgtgtagaattctgggagagcagtcatca
aattgaaatataatacagccctgagcatcatcacatgatgaagtctttct
taggattctgctcattgagaatctggctatttgaagatcccagtttaaca
agaccaaatgtgggcattgatcgccattaaaaatctgaagcctgcttctg
attctacctctgtgtgttagctttatcttaaatggaacattcaattctag
gactttatttcctatgaacatcatactgttgtatgttatgtaattgcttt
tcatcctttagctatggaagtgcatgggtctcctccaccccatgtgctac
atctatttttgtgtgttacgtttgactctggacagaaaataagataactt
cagaaagtgagttcaattagatcatccatgatgatggaatatgacctgaa
ctttacagagataaaaattttgggcactgtg
tttgtttagttctgtgccccatttttttttaatgaacttatttgattttc
tggagtccagcttcttgagttctttatatatattggatatgagtccacta
tctgatttaggattggtaaagatcctttcccaatctgttggtgaggggtg
cttctagttgcatatgtagtaaaggatggcctagtcggccatcaatggga
ggagaggcccttcatcttgtgaagatcatatgtcccagtacaggggaatg
ccagggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29042004_29043209
seq2: B6Ng01-001N23.b_47_1227 (reverse)

seq1  CACA-TGCCCAATATTTTTAAACTCTGTAAAGATTTCAAGGTCAATAATT  49
      |||| ||||||| |||||| | ||||||||||  ||| |||||    || 
seq2  CACAGTGCCCAAAATTTTT-ATCTCTGTAAAG--TTC-AGGTC----ATA  42

seq1  TACAATCAATCCATGGATGATTCTTATATTTGAACTTCACTTTTTTAAAA  99
      | | ||||   |||||||||    | || |||||| ||||||| |   ||
seq2  TTCCATCA--TCATGGATGA----TCTAATTGAAC-TCACTTTCT--GAA  83

seq1  GTTATCTTATTTTTCCTTGTTCAGAGTCAAACGT-ACACACAAAAATAGA  148
      |||||||||||||    ||| ||||||||||||| |||||||||||||||
seq2  GTTATCTTATTTT---CTGTCCAGAGTCAAACGTAACACACAAAAATAGA  130

seq1  TGTAGCCACATGGGGTG--AGAGACCCATGCACTTCCATAGCTTAAAGGA  196
      ||||| |||||||||||   |||||||||||||||||||||| |||||||
seq2  TGTAG-CACATGGGGTGGAGGAGACCCATGCACTTCCATAGC-TAAAGGA  178

seq1  TGAAAAGCAATTACATAAACAATAACAACAGTTATGATGTTCATAGGAAA  246
      |||||||||||||||| ||||   ||||||| ||||||||||||||||||
seq2  TGAAAAGCAATTACAT-AACA--TACAACAG-TATGATGTTCATAGGAAA  224

seq1  TAAAGTCCTTAGAATTTGAATGTTCCATTTAAGATAAAGCTAACAACACA  296
      |||||||| ||||| ||||||||||||||||||||||||||||| |||||
seq2  TAAAGTCC-TAGAA-TTGAATGTTCCATTTAAGATAAAGCTAAC-ACACA  271

seq1  GAGGTAGAATCAGAAGCAGGCTTCAGATTTTTAATGGCGATCAATGCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAATCAGAAGCAGGCTTCAGATTTTTAATGGCGATCAATGCCCA  321

seq1  CATTTGGTCTTGTTAAACTGGGATCTTCAAATAGCCAGATTCTCAATGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTCTTGTTAAACTGGGATCTTCAAATAGCCAGATTCTCAATGAG  371

seq1  CAGAATCCTAAGAAAGACTTCATCATGTGATGATGCTCAGGGCTGTATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCTAAGAAAGACTTCATCATGTGATGATGCTCAGGGCTGTATTA  421

seq1  TATTTCAATTTGATGACTGCTCTCCCAGAATTCTACACAATTGCTCTTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATTTGATGACTGCTCTCCCAGAATTCTACACAATTGCTCTTGG  471

seq1  CTTGGTCTCACAGTTGCACTAGTAGCTATTCTTCAGATATCTAAGTGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTCACAGTTGCACTAGTAGCTATTCTTCAGATATCTAAGTGATA  521

seq1  CGCTTTTACCAGGTGTCAACACCATGTCTGTCTTTAATTAAATGGTTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTACCAGGTGTCAACACCATGTCTGTCTTTAATTAAATGGTTTGT  571

seq1  GGACTCAAGCTCTATGGCTGTCTTTGAAGGTAGCAGAAAGAGGCCAGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGCTCTATGGCTGTCTTTGAAGGTAGCAGAAAGAGGCCAGAAG  621

seq1  CTGCTAAGGAATACTGTTGACTCTGGAAGCTCACAAGCTCACACTAGAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGGAATACTGTTGACTCTGGAAGCTCACAAGCTCACACTAGAAC  671

seq1  ACACCATTGAGTTTCAAAATGGCTGTCATCTTGGCTTTAACCCTGTGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTGAGTTTCAAAATGGCTGTCATCTTGGCTTTAACCCTGTGAGA  721

seq1  CTTACATGGAACAATTTACATAGAAAATTGCAAGAAAACTCTGCTGGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGGAACAATTTACATAGAAAATTGCAAGAAAACTCTGCTGGTTT  771

seq1  AAACAATGAAACCTTGGGTAATTTGTTATGATGCAGGAGAAAACTCACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGAAACCTTGGGTAATTTGTTATGATGCAGGAGAAAACTCACAT  821

seq1  GGCACTGTTAAGGATGGAGCAAGAGTTTGGTTGTTTTTTTTTTTTTGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTTAAGGATGGAGCAAGAGTTTGGTTGTTTTTTTTTTTTTGTTT  871

seq1  TTTTTTTTTGTTGTTGTTATGTTATATTTACAATCCACAGTTCTTTGAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTTGTTGTTATGTTATATTTACAATCCACAGTTCTTTGAAC  921

seq1  TCACATGTAGACTGGCTAATTTCCAACCAATTAGGGAGCACTAAGCCTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTAGACTGGCTAATTTCCAACCAATTAGGGAGCACTAAGCCTAC  971

seq1  CTCTCCATTTGCCATATGGCTTCCTTTCATGACCATCAAGGGACATCTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATTTGCCATATGGCTTCCTTTCATGACCATCAAGGGACATCTAG  1021

seq1  GGATTAGAAACCAAAAGCTGAAAGCTGAGCTGTTTGCCTTATCGTGTTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGAAACCAAAAGCTGAAAGCTGAGCTGTTTGCCTTATCGTGTTGA  1071

seq1  CAACAGCTCCTGTATCCTCAGCTGCTAATATTCTGCCACTAAATCTACGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTCCTGTATCCTCAGCTGCTAATATTCTGCCACTAAATCTACGT  1121

seq1  TAAAAAACATAAAAAGAAAAATAGCAGCACACTAAGGAAAATAAATGTTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACATAAAAAGAAAAATAGCAGCACACTAAGGAAAATAAATGTTC  1171

seq1  AGATGAATTC  1206
      ||||||||||
seq2  AGATGAATTC  1181

seq1: chr3_99866002_99866031
seq2: B6Ng01-001N23.g_304_333 (reverse)

seq1  TGGCCCTGGCATTCCCCTGTACTGGGACAT  30
      ||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCATTCCCCTGTACTGGGACAT  30