BAC Information

Click to search

BAC

Clone NameB6Ng01-001P13
Chromosome18 (Build37)
Map Location 10,669,117 - 10,820,816
singlet/doubletdoublet
Overlap geneAbhd3, Mib1
Upstream geneColec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880
Downstream geneLOC665296, 1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P13.bB6Ng01-001P13.g
ACCDH840133DH840134
length1,0461,018
definitionDH840133|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P13, 5' end.DH840134|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,669,117 - 10,670,148)(10,819,817 - 10,820,816)
sequence
gaattctttaaataaaaccgaaaccagttgccatccacagcatcactatc
agaactcaaactgtcctcggagatttgtagatgtaggttactgcattctt
tcaaagtaactttccagtttgtttgttttttaatttttgttttgagtgct
atgattccgagtgcgtatcatcacacccagctacagtcagcatgctttgc
tgcagcagggtctcatgggagccaccacgcctggcctacaaccttgtaaa
gtctcttaaatcttgtttcatcaaacatcagtatccggcagacacacaag
tgaaaatgtggtttggggctctcttctcttcatttcccacatataattaa
tatttttgcctggggctgatgagatgggtgagtgggcagaagtgtcacta
atcaagccttggacaacttgcatccaatttcctgtacccactatggaagg
gagagaaactattcctgaaagatatcttctgatctccacatgtgcccctc
tctggtaataaagaaaataacctagtaatttttttcagcccatgaacccc
ctcatttccattctctcctctctacccaccttacatgtattttcaaactc
taaactctgcataagtctgtggtaacaactttacaacctgcctccaggca
tccaacccaccctccacatttctaccactgccatggctctgagccacaaa
catgaccaacttgtgctcctttttccaaatagcaacgaagcagattaagc
ttcttaggattaccacacaggtctttaaaaccgactcgtgggcttccaaa
ggaagtcctgctactttatgaagagtatggggaagactagcctaatggtc
taaagcagtatacatacagggtcagaacccctgtcttctgagtcttattt
tccttatgtctcacttctgtcatctggaagatggaaatgatcatggtcac
acttgcctaatcattgagtgagtactactatgaagtaacctattgtctag
acagggcttttttgttgttgtgtattgatttgttgattgtttttgt
gaattcattgatcaaatttgaaaaaaaaaaaccctaaagaatattgtctt
tttatttataagcctggtatctctctgaaggaaggactctttttgtttct
atcttctgaagagatagtacatagctggcataatttcttccataaacaat
gcataaaactcagcatgaactcatcttgtccacagtgctttgtttttaaa
gtctaattattttaaaggcaatgtttttgacaactatccagagtccccag
ttctctttgatgggaagacctttcaggaaataaaaccatttaggtgataa
aatatggaaataaaacaagcatgaaggactcagggagagagagaattgtt
gttaatactatgttttcctttctagcctggacctagtgtggctcaggtgg
gctttgactcactctgcaatagaggatgactttctggctctgttatgcaa
atgccagaactgtacgtgcacatcatcactttcatgtaacttgcatttaa
atgcccataaaatctgtagtgatggcaccatgtacatccctgccttttta
aaaaagattatttatttattttatgtatgtggttgtgagccttcatgtgg
ttgttaagaattgaattttttaggacctctgttcactctggttggccctg
ttcgctcaggcccaatgatttatttattatacataagttcactgtagctg
tcttctgacacactaaatgagggcgtcagatctcattacaggtggttgtg
agctaccgtgttgttgctgggattgaactcagggcttttgggatagcaga
cagcgctcttactccgctgagccatctctccacccccattcctgactttt
gaattgccttttttaccggacttatctctttaagttgatcattacaggga
caggctcttaatataataatatcctccaaaaaattcatttatcctttgag
ggttagtttattcgcatcccaattcagcccattttcatctattggattaa
gaggaggcttggtcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10669117_10670148
seq2: B6Ng01-001P13.b_40_1085

seq1  GAATTCTTTAAATAAAACCAAAACCAGTTTCCATCCACAGCATCACTATC  50
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GAATTCTTTAAATAAAACCGAAACCAGTTGCCATCCACAGCATCACTATC  50

seq1  AGAACTCAAACTGTCCTCGGAGATTTGTAGATGTAGGTTACTGCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAACTGTCCTCGGAGATTTGTAGATGTAGGTTACTGCATTCTT  100

seq1  TCAAAGTAACTTTCCAGTTTGTTTGTTTTTTAATTTTTGTTTTGAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAACTTTCCAGTTTGTTTGTTTTTTAATTTTTGTTTTGAGTGCT  150

seq1  ATGATTCCAAGTGCGTATCATCACACCCAGCTACAGTCAGCATGCTTTGC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCGAGTGCGTATCATCACACCCAGCTACAGTCAGCATGCTTTGC  200

seq1  TGCAGCAGGGTCTCATGGGAGCCACCACGCCTGGCCTACAACCTTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGGGTCTCATGGGAGCCACCACGCCTGGCCTACAACCTTGTAAA  250

seq1  GTCTCTTAAATCTTGTTTCAGCAAACATCAGTATCCGGCAGACACACAAG  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCTCTTAAATCTTGTTTCATCAAACATCAGTATCCGGCAGACACACAAG  300

seq1  TGAAAATGTGGTTTGGGGCTCTCTTCTCTTCATTTCCCACATATAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTGGTTTGGGGCTCTCTTCTCTTCATTTCCCACATATAATTAA  350

seq1  TATTTTTGCCTGGGGCTGATGAGATGGCTGAGTGGGCAGAAGTGTCACTA  400
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATTTTTGCCTGGGGCTGATGAGATGGGTGAGTGGGCAGAAGTGTCACTA  400

seq1  ATCAAGCCTTGGACAACTTGCATCCAATTTCCTGTACCCACTATGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCTTGGACAACTTGCATCCAATTTCCTGTACCCACTATGGAAGG  450

seq1  GAGAGAAACTATTCCTGAAAGATATCTTCTGATCTCCACATGTGCCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACTATTCCTGAAAGATATCTTCTGATCTCCACATGTGCCCCTC  500

seq1  TCTGGTAATAAAGAAAATAACCTAGTAATTTTTTTCAGCCCATGAACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAATAAAGAAAATAACCTAGTAATTTTTTTCAGCCCATGAACCCC  550

seq1  CTCATTTCCATTCTCTCCTCTCTACCCACCTTACATGTATTTTCAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCCATTCTCTCCTCTCTACCCACCTTACATGTATTTTCAAACTC  600

seq1  TAAACTCTGCATAAGTCTGTGGTAACAACTTTACAACCTGCCTCCAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTGCATAAGTCTGTGGTAACAACTTTACAACCTGCCTCCAGGCA  650

seq1  TCCAACCCACCCTCCACATTTCTACCACTGCCATGGCTCTGAGCCACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCACCCTCCACATTTCTACCACTGCCATGGCTCTGAGCCACAAA  700

seq1  CATGACCAACTTGTGCTCCTTTTTCCAAATAGCAACGAAGCAGATTAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAACTTGTGCTCCTTTTTCCAAATAGCAACGAAGCAGATTAAGC  750

seq1  TTCTTAGGATTACCACACAGGTCTTTAAAACCGACTCGTGGGCTTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGATTACCACACAGGTCTTTAAAACCGACTCGTGGGCTTCCAAA  800

seq1  GGAAGTCCTGCTACTTTATGAAGAGTAAGGGGGAAGACTAGCCTAATGGT  850
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  GGAAGTCCTGCTACTTTATGAAGAGT-ATGGGGAAGACTAGCCTAATGGT  849

seq1  CTAAAGCAGTATACATACAGGGTCAGAACCCCTGTC-TCTGAGTCTTATT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAAAGCAGTATACATACAGGGTCAGAACCCCTGTCTTCTGAGTCTTATT  899

seq1  TTCCTTATGTCTCACTTCTGTCATCTGGAAGATGGAAATGATCATGGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCTTATGTCTCACTTCTGTCATCTGGAAGATGGAAATGATCATGGTCA  949

seq1  CACTTCCCTAAATCATTGAGTTAATACTACTATGAAGTAACCTATTGTCT  999
      ||||| ||| ||||||||||| | ||||||||||||||||||||||||| 
seq2  CACTTGCCT-AATCATTGAGTGAGTACTACTATGAAGTAACCTATTGTC-  997

seq1  TAGTCAGGGTTTTTTTGTTGTTG----------------TTGTTTTTGT  1032
      ||| ||||| |||||||||||||                ||||||||||
seq2  TAGACAGGGCTTTTTTGTTGTTGTGTATTGATTTGTTGATTGTTTTTGT  1046

seq1: chr18_10819817_10820816
seq2: B6Ng01-001P13.g_84_1085 (reverse)

seq1  AACTGATCAAGCCTCCTCTTTAATCAAAAGATAAAAATGGGGCAGAAATT  50
      |||||| ||||||||||||| |  ||| |||| ||||| |||| ||| | 
seq2  AACTGACCAAGCCTCCTCTTAATCCAATAGATGAAAAT-GGGCTGAATTG  49

seq1  GGAAGGGAA-AAAATAACCC-AAAAGTATAAATGAATTTATTGGAGGAAT  98
      ||| | ||| ||| ||||||  |||| |||||||||||| ||||||| ||
seq2  GGATGCGAATAAACTAACCCTCAAAGGATAAATGAATTTTTTGGAGG-AT  98

seq1  ATTAATAATATTAAGAGCCAGACCCTGAAATGATCAAC-TAAAGAGATTA  147
      ||| || |||||||||||| | ||||| |||||||||| ||||||||| |
seq2  ATT-ATTATATTAAGAGCCTGTCCCTGTAATGATCAACTTAAAGAGATAA  147

seq1  GCCAGGTTAAATAGGCAATT-AAAAGTCAGGAATGGGGCTGGTGAGATGG  196
      | | ||| ||| |||||||| ||||||||||||||||| ||| |||||||
seq2  GTCCGGTAAAAAAGGCAATTCAAAAGTCAGGAATGGGGGTGGAGAGATGG  197

seq1  CTCAGCGG-GTAAGAGCACTGTCTGCTATCCCAAAAGCCCTGAGTTCAAA  245
      |||||||| |||||||| ||||||||||||||||||||||||||||| ||
seq2  CTCAGCGGAGTAAGAGCGCTGTCTGCTATCCCAAAAGCCCTGAGTTC-AA  246

seq1  TCCCAGCAACTACATGGTAGCTCACAACCACCTGTAATGAGATCTGATGC  295
      |||||||||| ||| |||||||||||||||||||||||||||||||| ||
seq2  TCCCAGCAACAACACGGTAGCTCACAACCACCTGTAATGAGATCTGACGC  296

seq1  CCTCTTCTAGTGTGTCAGAAGACAGCTACAGTGAACTTATGTATAAT-AA  344
      |||| | |||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCATTTAGTGTGTCAGAAGACAGCTACAGTGAACTTATGTATAATAAA  346

seq1  TAAATCCTTGGGCCTGAGCGAACAGGGCCAACCAGAGTGAACAGAGGTCC  394
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTGGGCCTGAGCGAACAGGGCCAACCAGAGTGAACAGAGGTCC  396

seq1  TAAAAAATTCAATTCTTAACAACCACATGAAGGCTCACAACCACATACAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTCAATTCTTAACAACCACATGAAGGCTCACAACCACATACAT  446

seq1  AAAATAAATAAATAATCTTTTTTAAAAAGGCAGGGATCTACATGGTGCCA  494
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAATAAATAAATAATCTTTTTTAAAAAGGCAGGGATGTACATGGTGCCA  496

seq1  TCACTACAGATTTTATGGGCATTAAAATGCAAGTTACATGAAAGTGATGA  544
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCACTACAGATTTTATGGGCATTTAAATGCAAGTTACATGAAAGTGATGA  546

seq1  TGTGCACGTACAGTTCTGGCATTTGCATAACAGAGCCAGAAAGTCATCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGTACAGTTCTGGCATTTGCATAACAGAGCCAGAAAGTCATCCT  596

seq1  CTACTGCAGAGTGAGTCAAAGCCCACCTGAGCCACACTAGGTCCAGGCTA  644
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGAGTGAGTCAAAGCCCACCTGAGCCACACTAGGTCCAGGCTA  646

seq1  GAAAGGAAAACATAGTATTAACAACAATTCTCTCTCTCCCTGAGTCCTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAACATAGTATTAACAACAATTCTCTCTCTCCCTGAGTCCTTC  696

seq1  ATGCTTGTTTTATTTCCCTATTTTATCACCTAAATGGTTTTATTTCCTGA  744
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGCTTGTTTTATTTCCATATTTTATCACCTAAATGGTTTTATTTCCTGA  746

seq1  AAGGTCTTCCCATCAAAGAGAACTGGGGACTCTGGATAGCTGTCAAAAAC  794
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGTCTTCCCATCAAAGAGAACTGGGGACTCTGGATAGTTGTCAAAAAC  796

seq1  ATTGCCTTTAAAATAATTAGACTTTAAAAACAAAGCACTGTGGACAAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTTAAAATAATTAGACTTTAAAAACAAAGCACTGTGGACAAGAT  846

seq1  GAGTTCATGCTGAGTTTTATGCATTGTTTATGGAAGAAATTATGCCAGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATGCTGAGTTTTATGCATTGTTTATGGAAGAAATTATGCCAGCT  896

seq1  ATGTACTATCTCTTCAGAAGATAGAAACAAAAAGAGTCCTTCCTTCAGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTATCTCTTCAGAAGATAGAAACAAAAAGAGTCCTTCCTTCAGAG  946

seq1  AGATACCAGGCTTGTAAGTAAAAAGACAATATTCTTTAGGGTTTTTTTTT  994
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  AGATACCAGGCTTATAAATAAAAAGACAATATTCTTTAGGGTTTTTTTTT  996

seq1  TTCAAA  1000
      ||||||
seq2  TTCAAA  1002