BAC Information

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BAC

Clone NameB6Ng01-003C04
Chromosome17 (Build37)18 (Build37)
Map Location 82,913,508 - 82,914,26156,484,963 - 56,485,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141
Downstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C04.bB6Ng01-003C04.g
ACCDH840941DH840942
length755544
definitionDH840941|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C04, 5' end.DH840942|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,913,508 - 82,914,261)(56,484,963 - 56,485,737)
sequence
gaattcctgggaatctgttctttgttccttaaagatgatttcttgcttta
tgacaccagttatttgtcaccctttgtgttgcaaagactttcttcataat
gtcttgggtttggtcctttcttgcttttttgagttgtaaactgtctgggt
tttgattagaatggttaagatattttctctttagaggagagaattccaaa
gttatttaatatatgtgtgtgttgtgtgtgtgtgtgtgtgtatatacaat
atactgatattaaatatggaataggatatctcctctgaatgcccatttaa
tgaaggcttagtccctagcacatgacactactgggagaggacaggatctt
tacgtgttaggacccagttgaagaaactgggtcttgacttgaggcttgct
tgcttgtaaaggggaaaacgagaccccagcttccttttttgttgttttct
ttccagacaccattaaacaatcagacctctgctatcatttctgtattaat
tttctatcccaacttgtcttaaaacaacaaaacatccaagggatgaatca
cctacaaccatgagcgaaaatgatattttccttaagttgatttttgtcag
gtacctgtcacagcaatagaaatctgactaatatgattgatacagaatga
atatgtcccttatttgtgcacctcaacttctcaacctcacatacatccct
agagacagttgtgtagattttatatcaataaaatatcccatgtggttaag
aaatt
gaattctctctcgtaataactggactaggtactgatcctaaaagaatcat
ttcattgacttttttttgcagtcctgttttgttctaccccagatgggatg
ggggtttccagaggggaaatggggaaaggggataacatttgaaatgtaaa
taagtaaaatatccaataaaaaaagaagtgggaccaagtatagagactat
aggtaaatacagatattcattaattcatttgtgttgtgtgtgtgtgtgta
tatatatatatatatatatatatatacacacacacacacacaaaaaaaga
gaatgtgtgtgtgtgtgtatatatactgtgtgtgtgcgcgctctcttttt
ttttttttattttttttatatatatatataatgttagtttttttctctct
ctctcccccctacacacaccccccctctgggggggggagaaaaaaaagag
aaaaaaaaaaagagagaaaaaaatttttttttttgtgtatctacctgcgc
gagtgagagagagagagaggggggcgtgtctatagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82913508_82914261
seq2: B6Ng01-003C04.b_46_799

seq1  GAATTCCTGGGAATCTGTTCTTTGTTCCTTAAAGATGATTTCTTGCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAATCTGTTCTTTGTTCCTTAAAGATGATTTCTTGCTTTA  50

seq1  TGACACCAGTTATTTGTCACCCTTTGTGTTGCAAAGACTTTCTTCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCAGTTATTTGTCACCCTTTGTGTTGCAAAGACTTTCTTCATAAT  100

seq1  GTCTTGGGTTTGGTCCTTTCTTGCTTTTTTGAGTTGTAAACTGTCTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGTTTGGTCCTTTCTTGCTTTTTTGAGTTGTAAACTGTCTGGGT  150

seq1  TTTGATTAGAATGGTTAAGATATTTTCTCTTTAGAGGAGAGAATTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAGAATGGTTAAGATATTTTCTCTTTAGAGGAGAGAATTCCAAA  200

seq1  GTTATTTAATATATGTGTGTGTTGTGTGTGTGTGTGTGTGTATATACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTAATATATGTGTGTGTTGTGTGTGTGTGTGTGTGTATATACAAT  250

seq1  ATACTGATATTAAATATGGAATAGGATATCTCCTCTGAATGCCCATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATATTAAATATGGAATAGGATATCTCCTCTGAATGCCCATTTAA  300

seq1  TGAAGGCTTAGTCCCTAGCACATGACACTACTGGGAGAGGACAGGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTTAGTCCCTAGCACATGACACTACTGGGAGAGGACAGGATCTT  350

seq1  TACGTGTTAGGACCCAGTTGAAGAAACTGGGTCTTGACTTGAGGCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGTTAGGACCCAGTTGAAGAAACTGGGTCTTGACTTGAGGCTTGCT  400

seq1  TGCTTGTAAAGGGGAAAACGAGACCCCAGCTTCCTTTTTTGTTGTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAAAGGGGAAAACGAGACCCCAGCTTCCTTTTTTGTTGTTTTCT  450

seq1  TTCCAGACACCATTAAACAATCAGACCTCTGCTATCATTTCTGTATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACACCATTAAACAATCAGACCTCTGCTATCATTTCTGTATTAAT  500

seq1  TTTCTATCCCAACTTGTCTTAAAACAACAAAACATCCAAGGGATGAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCCCAACTTGTCTTAAAACAACAAAACATCCAAGGGATGAATCA  550

seq1  CCTACAACCATGAGCGAAAATGATATTTTCCTTAAGTTGATTTTTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACCATGAGCGAAAATGATATTTTCCTTAAGTTGATTTTTGTCAG  600

seq1  GTACCTGTCACAGCAATAGAAATCTGACTAATATGATTGATACAGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTCACAGCAATAGAAATCTGACTAATATGATTGATACAGAATGA  650

seq1  ATATGTCCCTTATTTGTGCACCTCAACTTCTCAACCTCACATACATCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCCTTATTTGTGCACCTCAACTTCTCAACCTCACATACATCCCT  700

seq1  AGAGACAGTTGTGTAGATTTTATATCAATAAAATATCCCATGTGGTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTTGTGTAGATTTTATATCAATAAAATATCCCATGTGGTTAAG  750

seq1  AAAT  754
      ||||
seq2  AAAT  754

seq1: chr18_56484963_56485737
seq2: B6Ng01-003C04.g_160_611 (reverse)

seq1  TCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATATATATATATATATATATATATATATATATACATATATATATATATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTATACGTATATGCATATATGTGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AATGTATTGAAATATTATAAGAATGTTCAATGTTTTCAACATTTACCTGA  200
                                               | |  ||  
seq2  -----------------------------------------TCTCTCTCT  9

seq1  AGATCCAAAACAATCCACCAT-TATTTTTCAATGACGAAAATTTTATTTT  249
        ||   | |||  || || | | | | ||  | ||             |
seq2  CTAT---AGACACGCCCCCCTCTCTCTCTCTCTCAC-------------T  43

seq1  AGGCAAAATAAACTACTCACCTACTAAACTAAAATTAAAATAAGTTTTTC  299
       |   |  || |            || || ||||  |||||         
seq2  CGCGCAGGTAGA------------TACACAAAAAAAAAAAT---------  72

seq1  TTTTTTTTCTTTTTTATTGGATATTTTCTTTTCCTTTTTTAAAAAGATTT  349
      |||||| ||| |||| ||     ||||||    ||||||           
seq2  TTTTTTCTCTCTTTTTTT-----TTTTCT----CTTTTT-----------  102

seq1  ATTTATCTATTATATGTGAGTAACTCCAGAAGAGGGTGTCAGATCTCTTT  399
       ||| ||                | ||   |||||| |   | | | | |
seq2  -TTTCTC---------------CCCCCCCCAGAGGGGG---GGTGTGTGT  133

seq1  ---------ACAAATGGTTATGAGCCACCATGTTGTTGCTGGGATTTGAA  440
               | | |  |  |  | | | |||  | |       || |  |
seq2  AGGGGGGAGAGAGAGAGAAAAAAACTAACATTATAT-------ATATATA  176

seq1  CTCAGGACCTTCTGAAGAGCAGTCAGTGCTCTTACCAGCTGAGTCATCTC  490
         |  |  |    || |  |   || || |  ||   |  ||| || | 
seq2  TAAAAAAAATAAAAAAAAAAAAAGAGAGCGCGCACACACACAGT-ATATA  225

seq1  TCCA---GCCTGGAAATTTTCTTTTTTTTTTTTTTTAAAGATTTATTTAT  537
      | ||    |    | ||| ||||||||| | | | |     | ||| |||
seq2  TACACACACACACACATTCTCTTTTTTTGTGTGTGTGTGTGTGTATATAT  275

seq1  TATTTTATGTAAGTACACTGTAGCTGTCTTCAGACACAC-CAGAAGAGGG  586
         | ||| ||         ||  | | | || |||||| || || |   
seq2  ATATATATATA---------TATATATATACACACACACACACAACA---  313

seq1  AGTCAGATCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT  636
         || ||    | ||| ||   ||| |   ||| | | ||         
seq2  ---CAAATGAATTAATGAATATCTGT-ATTTACC-TATAGT---------  349

seq1  TTGAACTCTGGACCTTTGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGC  686
           ||||  ||  ||||                     ||||||    
seq2  -----CTCTATAC--TTGG--------------------TCCCACT----  368

seq1  CATCTCACCAGCCCGGAAATTTTCTTTATTTACATTTCAAATGTTATCCT  736
        |||         ||| |||||  |||||||||||||||||||||||| 
seq2  --TCTTTTTTTATTGGATATTTTACTTATTTACATTTCAAATGTTATCCC  416

seq1  C-TTCCCAGTTTCCCCTCTCCTGGAAACACCCTATCCCAT  775
      | |||||  ||||||||   |||||||| ||| |||||||
seq2  CTTTCCCCATTTCCCCT---CTGGAAAC-CCCCATCCCAT  452