BAC Information

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BAC

Clone NameB6Ng01-003C20
Chromosome18 (Build37)
Map Location 59,786,500 - 59,787,692
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C20.bB6Ng01-003C20.g
ACCDH840969DH840970
length1,177730
definitionDH840969|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C20, 5' end.DH840970|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtgtttctttttaacataatctcaaatgcaccagcatctaa
atcagcaaacaaaatgtcatccatgtaatgagaaatgatagactgaagaa
attgcctacaaattagttctaatggttatcacacaaaatatcaaaataaa
gttagactacttaacattccttgtggaagtgccctccaatggtatctttt
tattggaccactgttgttcagagtaggtactgagaaagcaaaccttttcc
tatcctgctcatgtaaggctattgtaaaaaataaatctttttgtctttgt
cttatgactacatacagtttggtaacaatttggtgattctggttttaaca
agtctacctgtgaaccacatcaatctctgtgctgtcctatgtgtacagcc
atcacatctgtgcttcctgtcatctcccatctgaatgaacttctgcagtg
acctttgtttttatgatgtttcctgtgttaccactaatccttcctcccta
ctcagatacttcagtgataaagctaccccaacaacaccggaacaatgaca
acaccaatagatatgctaatatgaatggaatgaaagtaaaccttaatgag
ccccactcctatccaaagaactgcaagcaacttaggactgctcagaggtg
gagaatgtactgtcttcagagaacaaaactctgattggtaatctaatggc
attggtttgagcccttcctctgcatccaatcatggagtttatgtttacat
cagccaatcagccatgctgtgtctaaatgacagaattccattgtgttttt
tcttcattctcctgtgctcacattctttctgccctcctcttcacaagact
tttatgaaccttggatggaagctgactcgagagatgactccatctgtggc
tgagcactcaggcactgatgctaagcactttgatgggtatctgttttaaa
agaatgaaagaagtatgagaaatattttagactttgaaatttcataaaca
tgagaatcagatttctaaaagaaaacgaaatgctgctttagaaattcttg
catttataagtctagtttgggtaggttaagattatatttattgattaaga
attctataataaagcactatttgggattgggatagccattatgtaaatat
aagaataccatttaatttcaatccttc
gaattctctgtttagttctctaccccattttttgattggttgcttggagt
ttttggaggtaagcttcgtgagttcttaatatattttgaatattaaccat
ctatcagatatggggttagtgaagatcaagtggaaggatggggttgccat
cctatagtcaaaaattcttactcagaattgttgctgtctaaaaaaactgc
agggacaaaagtggagaagatattgagggaaataaggtccaatgtctggc
tcaaattggaacctatctcaaggtgaggctccaagtcactaatactgatg
caatgatgtacttacagacaggagcctagcatggctgccttccaagaggc
ccaacaagctgctgactgagacagaagcagattcttatactcaatcaatg
gacagaagctggggacccctgtggttgaattaaggaaaggctggaagaag
ctaatgaggacagtgactccataggaagaccagaattttcaactaaccca
gactcctgagatttctcagacactgagtcaccaaccaggtagcatacact
agctggtccgaggcctcagaaacacacacagcaaaggactctctgatctg
gcctcagtgaaagaagacacacctaacccttaagagacttgaggtcccag
ggaggccagaaagggtatgatggaaggtgtggggcgtggcaatatcctct
tagagatggggaggaggaatgggatgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_59786500_59787692
seq2: B6Ng01-003C20.b_44_1220 (reverse)

seq1  GAAGGATATGGAAAATAAATGATATTCTTAATATTAACATAATGGCTATC  50
      |||||  || |||| |||||| ||||||| ||||| ||||||||||||||
seq2  GAAGG--ATTGAAATTAAATGGTATTCTT-ATATTTACATAATGGCTATC  47

seq1  ACATCACAAAATAGTTGCTTTTATCTATAGTATTCTTAAATACAATAAAT  100
       ||   | |||||| ||| ||||| ||||| ||||||||   ||||||||
seq2  CCAATCCCAAATAG-TGC-TTTAT-TATAGAATTCTTAA--TCAATAAAT  92

seq1  AATAAATTCTTAAACTTACCCAAACTAGAC-TATAAATGCAAGAATGTCT  149
       ||||  |||| ||| |||||||||||||| ||||||||||||||| |||
seq2  -ATAA--TCTT-AACCTACCCAAACTAGACTTATAAATGCAAGAATTTCT  138

seq1  AAAGCAGCATTTCGTTTTCTTTTAGAAAATCTTGATTCTCATGTTTATGA  199
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  AAAGCAGCATTTCGTTTTCTTTTAG-AAATC-TGATTCTCATGTTTATGA  186

seq1  AATTTCAAAGTCTTAAAATATTTTCTCATACTTCTTTCATTCTTTTAAAA  249
      |||||||||||| ||||||| ||||||||||||||||||||||||| |||
seq2  AATTTCAAAGTC-TAAAATA-TTTCTCATACTTCTTTCATTCTTTT-AAA  233

seq1  ACAGATACCCATCAAAGTGCTTAGCATCAGTGCCTGAGTGCTCAGCCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACCCATCAAAGTGCTTAGCATCAGTGCCTGAGTGCTCAGCCACA  283

seq1  GATGGAGTCATCTCTCGAGTCAGCTTCCATCCAAGGTTCATAAAAGTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTCATCTCTCGAGTCAGCTTCCATCCAAGGTTCATAAAAGTCTT  333

seq1  GTGAAGAGGAGGGCAGAAAGAATGTGAGCACAGGAGAATGAAGAAAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGGAGGGCAGAAAGAATGTGAGCACAGGAGAATGAAGAAAAAAC  383

seq1  ACAATGGAATTCTGTCATTTAGACACAGCATGGCTGATTGGCTGATGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAATTCTGTCATTTAGACACAGCATGGCTGATTGGCTGATGTAA  433

seq1  ACATAAACTCCATGATTGGATGCAGAGGAAGGGCTCAAACCAATGCCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTCCATGATTGGATGCAGAGGAAGGGCTCAAACCAATGCCATT  483

seq1  AGATTACCAATCAGAGTTTTGTTCTCTGAAGACAGTACATTCTCCACCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCAATCAGAGTTTTGTTCTCTGAAGACAGTACATTCTCCACCTC  533

seq1  TGAGCAGTCCTAAGTTGCTTGCAGTTCTTTGGATAGGAGTGGGGCTCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTCCTAAGTTGCTTGCAGTTCTTTGGATAGGAGTGGGGCTCATT  583

seq1  AAGGTTTACTTTCATTCCATTCATATTAGCATATCTATTGGTGTTGTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTACTTTCATTCCATTCATATTAGCATATCTATTGGTGTTGTCAT  633

seq1  TGTTCCGGTGTTGTTGGGGTAGCTTTATCACTGAAGTATCTGAGTAGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGGTGTTGTTGGGGTAGCTTTATCACTGAAGTATCTGAGTAGGGA  683

seq1  GGAAGGATTAGTGGTAACACAGGAAACATCATAAAAACAAAGGTCACTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATTAGTGGTAACACAGGAAACATCATAAAAACAAAGGTCACTGC  733

seq1  AGAAGTTCATTCAGATGGGAGATGACAGGAAGCACAGATGTGATGGCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCATTCAGATGGGAGATGACAGGAAGCACAGATGTGATGGCTGT  783

seq1  ACACATAGGACAGCACAGAGATTGATGTGGTTCACAGGTAGACTTGTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGGACAGCACAGAGATTGATGTGGTTCACAGGTAGACTTGTTAA  833

seq1  AACCAGAATCACCAAATTGTTACCAAACTGTATGTAGTCATAAGACAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAATCACCAAATTGTTACCAAACTGTATGTAGTCATAAGACAAAG  883

seq1  ACAAAAAGATTTATTTTTTACAATAGCCTTACATGAGCAGGATAGGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGATTTATTTTTTACAATAGCCTTACATGAGCAGGATAGGAAAA  933

seq1  GGTTTGCTTTCTCAGTACCTACTCTGAACAACAGTGGTCCAATAAAAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTTTCTCAGTACCTACTCTGAACAACAGTGGTCCAATAAAAAGA  983

seq1  TACCATTGGAGGGCACTTCCACAAGGAATGTTAAGTAGTCTAACTTTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGGAGGGCACTTCCACAAGGAATGTTAAGTAGTCTAACTTTATT  1033

seq1  TTGATATTTTGTGTGATAACCATTAGAACTAATTTGTAGGCAATTTCTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTTGTGTGATAACCATTAGAACTAATTTGTAGGCAATTTCTTC  1083

seq1  AGTCTATCATTTCTCATTACATGGATGACATTTTGTTTGCTGATTTAGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCATTTCTCATTACATGGATGACATTTTGTTTGCTGATTTAGAT  1133

seq1  GCTGGTGCATTTGAGATTATGTTAAAAAGAAACACAAAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGCATTTGAGATTATGTTAAAAAGAAACACAAAGAATTC  1177